Strain identifier
BacDive ID: 132256
Type strain: 
Species: Bartonella ancashensis
Strain Designation: 20.00
Strain history: <- C. Maguiña, Univ. Peruana Cayetano Herdia, Lima, Peru; 20.00 <- Naval Med. Res. Center, Silver Spring, MD, USA <- C. Maguiña and D. Blazes
NCBI tax ID(s): 1318743 (species)
version 8.1 (current version)
General
@ref: 24045
BacDive-ID: 132256
DSM-Number: 29364
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-negative
description: Bartonella ancashensis 20.00 is a mesophilic, Gram-negative bacterium that was isolated from blood collected prior to antibiotic treatment from a three-year-old male patient with verruga peruana.
NCBI tax id
- NCBI tax id: 1318743
- Matching level: species
strain history
- @ref: 24045
- history: <- C. Maguiña, Univ. Peruana Cayetano Herdia, Lima, Peru; 20.00 <- Naval Med. Res. Center, Silver Spring, MD, USA <- C. Maguiña and D. Blazes
doi: 10.13145/bacdive132256.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Bartonellaceae
- genus: Bartonella
- species: Bartonella ancashensis
- full scientific name: Bartonella ancashensis Mullins et al. 2015
synonyms
@ref synonym 20215 Bartonella ancashensis 20215 Bartonella ancashi
@ref: 24045
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Bartonellaceae
genus: Bartonella
species: Bartonella ancashensis
full scientific name: Bartonella ancashensis Mullins et al. 2015
strain designation: 20.00
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.951
Culture and growth conditions
culture medium
- @ref: 24045
- name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1203
- composition: Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water
culture temp
- @ref: 24045
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 100 |
| 69480 | no | 99.998 |
Isolation, sampling and environmental information
isolation
- @ref: 24045
- sample type: blood collected prior to antibiotic treatment from a three-year-old male patient with verruga peruana
- geographic location: Ancash region, rural setting outside of the town of Caraz
- country: Peru
- origin.country: PER
- continent: Middle and South America
- latitude: -9.0417
- longitude: -77.7393
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | #Antibiotic treatment |
| #Infection | #Patient | |
| #Infection | #Patient | |
| #Host Body Product | #Fluids | #Blood |
| #Host | #Human | #Child |
| #Host | #Human | #Male |
Sequence information
16S sequences
- @ref: 24045
- description: Bartonella ancashensis strain CO20 16S ribosomal RNA gene, partial sequence
- accession: KC178617
- length: 1424
- database: ena
- NCBI tax ID: 1318743
Genome sequences
- @ref: 66792
- description: Bartonella ancashensis 20.00
- accession: GCA_001281405
- assembly level: complete
- database: ncbi
- NCBI tax ID: 1318743
GC content
- @ref: 24045
- GC-content: 38.4
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| motile | yes | 61.528 | no |
| flagellated | no | 91.91 | no |
| gram-positive | no | 98.784 | no |
| anaerobic | no | 97.128 | no |
| halophile | no | 64.187 | no |
| spore-forming | no | 97.236 | no |
| glucose-util | no | 50 | no |
| aerobic | no | 96.357 | no |
| thermophile | no | 80.721 | yes |
| glucose-ferment | no | 73.909 | no |
External links
@ref: 24045
culture collection no.: DSM 29364, ATCC BAA 2694
straininfo link
- @ref: 90605
- straininfo: 402858
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26296673 | Description of Bartonella ancashensis sp. nov., isolated from the blood of two patients with verruga peruana. | Mullins KE, Hang J, Jiang J, Leguia M, Kasper MR, Ventosilla P, Maguina C, Jarman RG, Blazes D, Richards AL | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000416 | 2015 | Bacterial Typing Techniques, Bartonella/*classification/genetics/isolation & purification, Bartonella Infections/blood/*microbiology, Base Composition, Child, Child, Preschool, DNA, Bacterial/genetics, DNA, Ribosomal Spacer/genetics, Fatty Acids/chemistry, Genes, Bacterial, Genotype, Humans, Male, Molecular Sequence Data, Peru, *Phylogeny, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA | Genetics |
| Genetics | 26543106 | Complete Genome Sequence of Bartonella ancashensis Strain 20.00, Isolated from the Blood of a Patient with Verruga Peruana. | Hang J, Mullins KE, Clifford RJ, Onmus-Leone F, Yang Y, Jiang J, Leguia M, Kasper MR, Maguina C, Lesho EP, Jarman RG, Richards AL, Blazes D | Genome Announc | 10.1128/genomeA.01217-15 | 2015 | Phylogeny |
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 24045 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-29364 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29364) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |||
| 90605 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402858.1 |