General

@ref: 24044

BacDive-ID: 132255

DSM-Number: 102210

keywords: 16S sequence, Bacteria, mesophilic

description: Nocardia rhizosphaerae DSM 102210 is a mesophilic bacterium that was isolated from rhizosphere soil of Artemisia Linn..

NCBI tax id

• NCBI tax id: 1691571
• Matching level: species

strain history

• @ref: 24044
• history: <- KCTC; KCTC 29678

doi: 10.13145/bacdive132255.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/actinomycetota
• domain: Bacteria
• phylum: Actinomycetota
• class: Actinomycetes
• order: Mycobacteriales
• family: Nocardiaceae
• genus: Nocardia
• species: Nocardia rhizosphaerae
• full scientific name: Nocardia rhizosphaerae Wang et al. 2015

@ref: 24044

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Nocardia

species: Nocardia rhizosphaerae

full scientific name: Nocardia rhizosphaerae Wang et al. 2015

type strain: yes

Morphology

multimedia

Culture and growth conditions

culture medium

• @ref: 24044
• name: BHI MEDIUM (DSMZ Medium 215)
• growth: yes
• link: https://mediadive.dsmz.de/medium/215
• composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

culture temp

• @ref: 24044
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 24044
• sample type: rhizosphere soil of Artemisia Linn.
• host species: Artemisia
• geographic location: coastal region of Lianyuangang
• country: China
• origin.country: CHN
• continent: Asia
• latitude: 35.1592
• longitude: 119.7

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_112941.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_243;97_280;98_76524;99_112941&stattab=map
• Last taxonomy: Nocardia rhizosphaerae subclade
• 16S sequence: KP972639
• Sequence Identity:
• Total samples: 171
• soil counts: 47
• aquatic counts: 14
• animal counts: 99
• plant counts: 11

Safety information

risk assessment

• @ref: 24044
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 24044
• description: Nocardia rhizosphaerae strain KLBMP S0043 16S ribosomal RNA gene, partial sequence
• accession: KP972639
• length: 1425
• database: ena
• NCBI tax ID: 1691571

GC content

• @ref: 24044
• GC-content: 71.4
• method: high performance liquid chromatography (HPLC)

External links

@ref: 24044

culture collection no.: DSM 102210, CGMCC 4.7204, KCTC 29678, KLBMP S0043

straininfo link

• @ref: 90604
• straininfo: 398096

literature

• topic: Phylogeny
• Pubmed-ID: 25896308
• title: Nocardia rhizosphaerae sp. nov., a novel actinomycete isolated from the coastal rhizosphere of Artemisia Linn., China.
• authors: Wang Y, Liu W, Feng WW, Zhou XQ, Bai JL, Yuan B, Ju XY, Cao CL, Huang Y, Jiang JH, Lv AJ, Qin S
• journal: Antonie Van Leeuwenhoek
• DOI: 10.1007/s10482-015-0460-0
• year: 2015
• mesh: Artemisia/growth & development, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Nocardia/*classification/genetics/*isolation & purification/physiology, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analysis
• topic2: Genetics

Reference