Strain identifier

BacDive ID: 132255

Type strain: Yes

Species: Nocardia rhizosphaerae

Strain history: <- KCTC; KCTC 29678

NCBI tax ID(s): 1691571 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 24044

BacDive-ID: 132255

DSM-Number: 102210

keywords: Bacteria, 16S sequence, mesophilic

description: Nocardia rhizosphaerae DSM 102210 is a mesophilic bacterium that was isolated from rhizosphere soil of Artemisia Linn..

NCBI tax id

  • NCBI tax id: 1691571
  • Matching level: species

strain history: <- KCTC; KCTC 29678

doi: 10.13145/bacdive132255.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Nocardiaceae
  • genus: Nocardia
  • species: Nocardia rhizosphaerae
  • full scientific name: Nocardia rhizosphaerae Wang et al. 2015

@ref: 24044

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardiaceae

genus: Nocardia

species: Nocardia rhizosphaerae

full scientific name: Nocardia rhizosphaerae Wang et al. 2015

type strain: yes

Morphology

multimedia

@refmultimedia contentcaptionintellectual property rights
24044https://www.dsmz.de/microorganisms/photos/DSM_102210.jpgMedium 553 28°C© Leibniz-Institut DSMZ
24044https://www.dsmz.de/microorganisms/photos/DSM_102210-1.jpg© Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 24044
  • name: BHI MEDIUM (DSMZ Medium 215)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/215
  • composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

culture temp

  • @ref: 24044
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 24044
  • sample type: rhizosphere soil of Artemisia Linn.
  • host species: Artemisia
  • geographic location: coastal region of Lianyuangang
  • country: China
  • origin.country: CHN
  • continent: Asia
  • latitude: 35.1592
  • longitude: 119.7

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Rhizosphere

Safety information

risk assessment

  • @ref: 24044
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 24044
  • description: Nocardia rhizosphaerae strain KLBMP S0043 16S ribosomal RNA gene, partial sequence
  • accession: KP972639
  • length: 1425
  • database: ena
  • NCBI tax ID: 1691571

GC content

  • @ref: 24044
  • GC-content: 71.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 24044

culture collection no.: DSM 102210, CGMCC 4.7204, KCTC 29678, KLBMP S0043

literature

  • topic: Phylogeny
  • Pubmed-ID: 25896308
  • title: Nocardia rhizosphaerae sp. nov., a novel actinomycete isolated from the coastal rhizosphere of Artemisia Linn., China.
  • authors: Wang Y, Liu W, Feng WW, Zhou XQ, Bai JL, Yuan B, Ju XY, Cao CL, Huang Y, Jiang JH, Lv AJ, Qin S
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-015-0460-0
  • year: 2015
  • mesh: Artemisia/growth & development, Bacterial Typing Techniques, Base Composition, Carbohydrates/analysis, Cell Wall/chemistry, China, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Microscopy, Electron, Scanning, Molecular Sequence Data, Nocardia/*classification/genetics/*isolation & purification/physiology, Nucleic Acid Hybridization, Peptidoglycan/analysis, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analysis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24044Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102210Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102210)