Strain identifier
BacDive ID: 132251
Type strain: 
Species: Streptosporangium terrae
Strain Designation: VRC21
Strain history: <- Radha vaddavalli, Department of Botany, Osmania Univ.,India
NCBI tax ID(s): 1217546 (species)
General
@ref: 24040
BacDive-ID: 132251
DSM-Number: 102296
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive
description: Streptosporangium terrae VRC21 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from Callistemon citrinus rhizosphere.
NCBI tax id
- NCBI tax id: 1217546
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24040 | <- KCTC; KCTC 29207 |
| 67771 | <- Radha vaddavalli, Department of Botany, Osmania Univ.,India |
doi: 10.13145/bacdive132251.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Streptosporangiales
- family: Streptosporangiaceae
- genus: Streptosporangium
- species: Streptosporangium terrae
- full scientific name: Streptosporangium terrae Vaddavalli et al. 2015
@ref: 24040
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Streptosporangiaceae
genus: Streptosporangium
species: Streptosporangium terrae
full scientific name: Streptosporangium terrae Vaddavalli et al. 2015
strain designation: VRC21
type strain: yes
Morphology
cell morphology
- @ref: 67771
- gram stain: positive
Culture and growth conditions
culture temp
- @ref: 67771
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
observation
- @ref: 67771
- observation: quinones: MK-9(H2), MK-9(H4)
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|---|
| 24040 | Callistemon citrinus rhizosphere | Callistemon citrinus | Hyderabad | India | IND | Asia | 36.0983 | 81.8108 |
| 67771 | From Callistemon plant rhizosphere | India | IND | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Shrub (Scrub) |
| #Host Body-Site | #Plant | #Rhizosphere |
taxonmaps
- @ref: 69479
- File name: preview.99_37739.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_239;96_1144;97_1343;98_27746;99_37739&stattab=map
- Last taxonomy: Streptosporangium
- 16S sequence: JX082289
- Sequence Identity:
- Total samples: 79
- soil counts: 63
- aquatic counts: 3
- animal counts: 2
- plant counts: 11
Sequence information
16S sequences
- @ref: 24040
- description: Streptosporangium terrae strain VRC21 16S ribosomal RNA gene, partial sequence
- accession: JX082289
- length: 1466
- database: ena
- NCBI tax ID: 1217546
GC content
- @ref: 24040
- GC-content: 69.5
- method: thermal denaturation, midpoint method (Tm)
External links
@ref: 24040
culture collection no.: DSM 102296, KCTC 29207, MTCC 11724
literature
- topic: Phylogeny
- Pubmed-ID: 25690360
- title: Streptosporangium terrae sp. nov., a novel actinomycete isolated from the rhizosphere of Callistemon citrinus (Curtis), India.
- authors: Vaddavalli R, Gaddam B, Linga VR
- journal: J Antibiot (Tokyo)
- DOI: 10.1038/ja.2015.5
- year: 2015
- mesh: Actinobacteria/*classification/genetics/*isolation & purification/physiology, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, Fatty Acids/analysis, India, Molecular Sequence Data, Myrtaceae/*microbiology, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, Vitamin K 2/analysis
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24040 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102296 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102296) | |
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |