Strain identifier

BacDive ID: 132225

Type strain: Yes

Species: Kibdelosporangium lantanae

Strain history: <- Li Dan, Xiamen Univ., China

NCBI tax ID(s): 1497396 (species)

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General

@ref: 24014

BacDive-ID: 132225

DSM-Number: 102252

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive

description: Kibdelosporangium lantanae DSM 102252 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from rhizosphere soil of an ornament plant Lantana camara.

NCBI tax id

  • NCBI tax id: 1497396
  • Matching level: species

strain history

@refhistory
24014<- KCTC; KCTC 29675
67770KCTC 29675 <-- Y. Wu; Xiamen Univ., China; XMU 506.
67771<- Li Dan, Xiamen Univ., China

doi: 10.13145/bacdive132225.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Kibdelosporangium
  • species: Kibdelosporangium lantanae
  • full scientific name: Kibdelosporangium lantanae Li et al. 2015

@ref: 24014

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Kibdelosporangium

species: Kibdelosporangium lantanae

full scientific name: Kibdelosporangium lantanae Li et al. 2015

type strain: yes

Morphology

cell morphology

  • @ref: 67771
  • gram stain: positive

multimedia

  • @ref: 24014
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102252.jpg
  • caption: Medium 553 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 24014
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
24014positivegrowth28mesophilic
67770positivegrowth28mesophilic
67771positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

observation

@refobservation
67770quinones: MK-9(H4)
67771quinones: MK-9(H4)

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinent
24014rhizosphere soil of an ornament plant Lantana camaraLantana camaraXiamen CityChinaCHNAsia
67770Rhizosphere soil of an ornamental plant, Lantana camara L.Lantana camaraXiamen City, Fujian ProvinceChinaCHNAsia
67771From rhizosphere soil of plant Lantana camara L.ChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Soil
#Host#Plants#Shrub (Scrub)
#Host Body-Site#Plant#Rhizosphere

taxonmaps

  • @ref: 69479
  • File name: preview.99_149199.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_415;97_14873;98_98668;99_149199&stattab=map
  • Last taxonomy: Kibdelosporangium lantanae subclade
  • 16S sequence: KJ786942
  • Sequence Identity:
  • Total samples: 111
  • soil counts: 96
  • aquatic counts: 1
  • animal counts: 6
  • plant counts: 8

Safety information

risk assessment

  • @ref: 24014
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
67770Kibdelosporangium lantanae strain XMU 506 16S ribosomal RNA gene, partial sequenceKJ7869421480ena1497396
24014KJ 786942ena

GC content

@refGC-contentmethod
2401467.3
6777167.34
6777067.3high performance liquid chromatography (HPLC)

External links

@ref: 24014

culture collection no.: DSM 102252, KCTC 29675, MCCC 1K00430, XMU 506, JCM 31486

straininfo link

  • @ref: 90575
  • straininfo: 399964

literature

  • topic: Phylogeny
  • Pubmed-ID: 25951859
  • title: Kibdelosporangium lantanae sp. nov., isolated from the rhizosphere soil of an ornamental plant, Lantana camara L.
  • authors: Li D, Huang Y, Song S, Xue C, Wu Y, Deng X
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.000302
  • year: 2015
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Lantana/*microbiology, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
24014Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102252Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102252)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90575Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID399964.1