Strain identifier
BacDive ID: 132224
Type strain: 
Species: Jiangella mangrovi
Strain Designation: 3SM4-07
Strain history: <- NBRC; NBRC 109648 <- BCC; BCC 60398 <- K. Duangmal; 3SM4-07
NCBI tax ID(s): 1524084 (species)
version 8.1 (current version)
General
@ref: 24013
BacDive-ID: 132224
DSM-Number: 102122
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, Gram-positive
description: Jiangella mangrovi 3SM4-07 is a mesophilic, Gram-positive bacterium that was isolated from Soil in mangrove forests.
NCBI tax id
- NCBI tax id: 1524084
- Matching level: species
strain history
- @ref: 24013
- history: <- NBRC; NBRC 109648 <- BCC; BCC 60398 <- K. Duangmal; 3SM4-07
doi: 10.13145/bacdive132224.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Jiangellales
- family: Jiangellaceae
- genus: Jiangella
- species: Jiangella mangrovi
- full scientific name: Jiangella mangrovi Suksaard et al. 2015
@ref: 24013
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Jiangellaceae
genus: Jiangella
species: Jiangella mangrovi
full scientific name: Jiangella mangrovi Suksaard et al. 2015
strain designation: 3SM4-07
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence | motility |
|---|---|---|---|
| 69480 | positive | 100 | |
| 69480 | 94.669 | no |
multimedia
- @ref: 24013
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102122.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 24013
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 24013
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 24013
- sample type: Soil in mangrove forests
- geographic location: Laemson National Park, Ranong
- country: Thailand
- origin.country: THA
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Mangrove |
| #Environmental | #Terrestrial | #Forest |
| #Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
- @ref: 24013
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 24013
- description: Jiangella mangrovi gene for 16S ribosomal RNA, partial sequence
- accession: AB976540
- length: 1477
- database: ena
- NCBI tax ID: 1524084
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Jiangella mangrovi DSM 102122 | GCA_014204975 | contig | ncbi | 1524084 |
| 66792 | Jiangella mangrovi strain DSM 102122 | 1524084.3 | wgs | patric | 1524084 |
| 66792 | Jiangella mangrovi DSM 102122 | 2870631513 | draft | img | 1524084 |
GC content
- @ref: 24013
- GC-content: 72.3
- method: high performance liquid chromatography (HPLC)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 80 | no |
| motile | no | 86.731 | no |
| gram-positive | yes | 93.408 | no |
| anaerobic | no | 99.182 | no |
| aerobic | yes | 93.09 | no |
| halophile | no | 90.668 | no |
| spore-forming | yes | 55.985 | no |
| glucose-util | yes | 87.572 | no |
| flagellated | no | 98.465 | no |
| thermophile | no | 97.62 | yes |
| glucose-ferment | no | 88.486 | no |
External links
@ref: 24013
culture collection no.: DSM 102122, BCC 60398, NBRC 109648
straininfo link
- @ref: 90574
- straininfo: 396965
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 25948618 | Jiangella mangrovi sp. nov., isolated from mangrove soil. | Suksaard P, Duangmal K, Srivibool R, Xie Q, Hong K, Pathom-Aree W | Int J Syst Evol Microbiol | 10.1099/ijs.0.000303 | 2015 | Actinomycetales/*classification/genetics/isolation & purification, Avicennia/*microbiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, DNA, Ribosomal/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Thailand, Vitamin K 2/analogs & derivatives/chemistry | Genetics |
| Phylogeny | 30801239 | Jiangella rhizosphaerae sp. nov., an actinomycete isolated from the rhizosphere soil of wheat (Triticum aestivum L.). | Han C, Zhao J, Shi H, Tian Y, Zhang C, Guo X, Xiang W, Wang X | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003314 | 2019 | Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Triticum/*microbiology, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
| Phylogeny | 32228773 | Genome-based classification of three novel actinobacteria from the Karakum Desert: Jiangella asiatica sp. nov., Jiangella aurantiaca sp. nov. and Jiangella ureilytica sp. nov. | Saygin H, Ay H, Guven K, Sahin N | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004011 | 2020 | Actinobacteria/*classification/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, *Desert Climate, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Peptidoglycan/chemistry, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Turkmenistan, Vitamin K 2/analogs & derivatives/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24013 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102122 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102122) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90574 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID396965.1 |