Strain identifier
BacDive ID: 132214
Type strain: 
Species: Mycobacterium anyangense
Strain Designation: QIA-38, QIA-38(NTM-9)
Strain history: <- BJ Kim, Seoul Natl. Univ.
NCBI tax ID(s): 1431246 (species)
version 8.1 (current version)
General
@ref: 24003
BacDive-ID: 132214
DSM-Number: 102212
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic
description: Mycobacterium anyangense QIA-38 is an aerobe, mesophilic bacterium that was isolated from Hanwoo .
NCBI tax id
- NCBI tax id: 1431246
- Matching level: species
strain history
| @ref | history |
|---|---|
| 24003 | <- KCTC; KCTC 29443 |
| 67770 | B.-J. Kim; Seoul Natl. Univ. Coll. of Med., South Korea; QIA-38. |
| 67771 | <- BJ Kim, Seoul Natl. Univ. |
doi: 10.13145/bacdive132214.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium anyangense
- full scientific name: Mycobacterium anyangense Kim et al. 2015
synonyms
- @ref: 20215
- synonym: Mycolicibacterium anyangense
@ref: 24003
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium anyangense
full scientific name: Mycobacterium anyangense Kim et al. 2015
strain designation: QIA-38, QIA-38(NTM-9)
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 95.948 | |
| 69480 | 100 | positive |
multimedia
- @ref: 24003
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102212.jpg
- caption: Medium 250 37°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 24003
- name: MIDDLEBROOK MEDIUM (DSMZ Medium 645)
- growth: yes
- link: https://mediadive.dsmz.de/medium/645
- composition: Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 24003 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 37 | mesophilic |
| 67771 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 67771
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 97 |
| 69480 | no | 99.988 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | host species |
|---|---|---|---|---|---|---|
| 24003 | Hanwoo (Bos Tauruscoreanea) | Animal and Plant Quarantine Agency | Republic of Korea | KOR | Asia | |
| 67770 | Whole blood of Korean native cattle, Hanwoo (Bos taurus coreanae) | Republic of Korea | KOR | Asia | Bos taurus coreanae | |
| 67771 | From Animal and Plant Quarantine Agency | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Host
- Cat2: #Mammals
- Cat3: #Bovinae (Cow, Cattle)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 24003 | Mycobacterium anyangense strain QIA-38 16S ribosomal RNA gene, partial sequence | KJ855063 | 1420 | ena | 1431246 |
| 67770 | Mycobacterium anyangense strain QIA-38 16S ribosomal RNA gene, partial sequence | KF910200 | 1288 | ena | 1431246 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycolicibacterium anyangense JCM 30275 | GCA_010731855 | complete | ncbi | 1431246 |
| 66792 | Mycolicibacterium anyangense strain JCM 30275 | 1431246.5 | complete | patric | 1431246 |
| 66792 | Mycolicibacterium anyangense JCM 30275 | 2888250102 | complete | img | 1431246 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 97 | no |
| motile | no | 94.459 | no |
| flagellated | no | 98.192 | no |
| gram-positive | yes | 88.539 | no |
| anaerobic | no | 99.374 | yes |
| aerobic | yes | 90.88 | no |
| halophile | no | 95.363 | no |
| spore-forming | no | 88.757 | no |
| glucose-util | yes | 84.583 | no |
| thermophile | no | 99.535 | yes |
| glucose-ferment | no | 91.506 | no |
External links
@ref: 24003
culture collection no.: DSM 102212, JCM 30275, KCTC 29443
straininfo link
- @ref: 90567
- straininfo: 398703
literature
- topic: Phylogeny
- Pubmed-ID: 25870258
- title: Mycobacterium anyangense sp. nov., a rapidly growing species isolated from blood of Korean native cattle, Hanwoo (Bos taurus coreanae).
- authors: Kim BJ, Kim JM, Kim BR, Lee SY, Kim G, Jang YH, Ryoo S, Jeon CO, Jin HM, Jeong J, Lee SH, Lim JH, Kook YH, Kim BJ
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.000255
- year: 2015
- mesh: Animals, Cattle/*microbiology, Cattle Diseases/*microbiology, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Mycobacterium Infections/microbiology/*veterinary, Mycolic Acids/chemistry, Nontuberculous Mycobacteria/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Peptidoglycan/chemistry, *Phylogeny, Pigmentation, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 24003 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102212 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102212) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 90567 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID398703.1 |