Strain identifier
BacDive ID: 132182
Type strain: 
Species: Oligoflexus tunisiensis
Strain Designation: Shr3
Strain history: T. Naganuma Shr3.
NCBI tax ID(s): 708132 (species)
version 8.1 (current version)
General
@ref: 23971
BacDive-ID: 132182
DSM-Number: 103476
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Oligoflexus tunisiensis Shr3 is a mesophilic bacterium that was isolated from desert sand gravels.
NCBI tax id
- NCBI tax id: 708132
- Matching level: species
strain history
| @ref | history |
|---|---|
| 23971 | <- NCIMB <- T. Naganuma, Graduate Schoole of Biosphere, Hiroshima University, Japan |
| 67770 | T. Naganuma Shr3. |
doi: 10.13145/bacdive132182.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Oligoflexia
- order: Oligoflexales
- family: Oligoflexaceae
- genus: Oligoflexus
- species: Oligoflexus tunisiensis
- full scientific name: Oligoflexus tunisiensis Nakai et al. 2014
@ref: 23971
domain: Bacteria
phylum: Proteobacteria
class: Oligoflexia
order: Oligoflexales
family: Oligoflexaceae
genus: Oligoflexus
species: Oligoflexus tunisiensis
full scientific name: Oligoflexus tunisiensis Nakai et al. 2014
strain designation: Shr3
type strain: no
Culture and growth conditions
culture medium
- @ref: 23971
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 23971 | positive | growth | 25 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
|---|---|---|---|---|---|---|---|
| 23971 | desert sand gravels | eastern margin of Sahara, Matmata | Tunisia | TUN | Africa | 33.5167 | 9.95 |
| 67770 | Sand gravels collected from the Sahara Desert | Tunisia | TUN | Africa |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Terrestrial | #Desert |
| #Environmental | #Terrestrial | #Sandy |
taxonmaps
- @ref: 69479
- File name: preview.99_26518.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_2895;96_13220;97_16065;98_19905;99_26518&stattab=map
- Last taxonomy: Oligoflexus tunisiensis subclade
- 16S sequence: AB540021
- Sequence Identity:
- Total samples: 1219
- soil counts: 1053
- aquatic counts: 44
- animal counts: 30
- plant counts: 92
Safety information
risk assessment
- @ref: 23971
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23971
- description: Oligoflexus tunisiensis gene for 16S rRNA, partial sequence
- accession: AB540021
- length: 1458
- database: ena
- NCBI tax ID: 708132
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Oligoflexus tunisiensis Shr3 | 2667527381 | draft | img | 708132 |
| 67770 | Oligoflexus tunisiensis Shr3 | GCA_001748245 | scaffold | ncbi | 708132 |
GC content
- @ref: 23971
- GC-content: 54.0
External links
@ref: 23971
culture collection no.: DSM 103476, JCM 16864, NCIMB 14846
straininfo link
- @ref: 90537
- straininfo: 405741
literature
- topic: Phylogeny
- Pubmed-ID: 25013226
- title: Oligoflexus tunisiensis gen. nov., sp. nov., a Gram-negative, aerobic, filamentous bacterium of a novel proteobacterial lineage, and description of Oligoflexaceae fam. nov., Oligoflexales ord. nov. and Oligoflexia classis nov.
- authors: Nakai R, Nishijima M, Tazato N, Handa Y, Karray F, Sayadi S, Isoda H, Naganuma T
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.060798-0
- year: 2014
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Desert Climate, Fatty Acids/chemistry, Gram-Negative Bacteria/classification, Molecular Sequence Data, *Phylogeny, Proteobacteria/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Tunisia, Vitamin K 2/analogs & derivatives/chemistry
- topic2: Genetics
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23971 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103476 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103476) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90537 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405741.1 |