Strain identifier
BacDive ID: 132151
Type strain:
Species: Methylomonas paludis
Strain Designation: MG30
Strain history: <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; MG30 <- I. S. Kulichevskaya
NCBI tax ID(s): 1173101 (species)
General
@ref: 20651
BacDive-ID: 132151
DSM-Number: 24973
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped
description: Methylomonas paludis MG30 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from acidic Sphagnum peat bog.
NCBI tax id
- NCBI tax id: 1173101
- Matching level: species
strain history
- @ref: 20651
- history: <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; MG30 <- I. S. Kulichevskaya
doi: 10.13145/bacdive132151.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Methylococcales
- family: Methylococcaceae
- genus: Methylomonas
- species: Methylomonas paludis
- full scientific name: Methylomonas paludis Danilova et al. 2013
@ref: 20651
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Methylococcales
family: Methylococcaceae
genus: Methylomonas
species: Methylomonas paludis
full scientific name: Methylomonas paludis Danilova et al. 2013
strain designation: MG30
type strain: yes
Morphology
cell morphology
- @ref: 30839
- gram stain: negative
- cell length: 2.5 µm
- cell width: 1.25 µm
- cell shape: rod-shaped
- motility: no
pigmentation
- @ref: 30839
- production: yes
Culture and growth conditions
culture medium
- @ref: 20651
- name: LM-MEDIUM (DSMZ Medium 1347)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1347
- composition: Name: M2-MEDIUM (DSMZ Medium 1347) Composition: KNO3 0.24975 g/l KH2PO4 0.0999001 g/l MgSO4 x 7 H2O 0.04995 g/l NaCl 0.01998 g/l CaCl2 x 2 H2O 0.00999001 g/l EDTA 0.00499501 g/l FeSO4 x 7 H2O 0.001998 g/l CoCl2 x 6 H2O 0.0001998 g/l CuCl2 x 5 H2O 9.99001e-05 g/l ZnSO4 x 7 H2O 9.99001e-05 g/l Na2MoO4 2.997e-05 g/l NiCl2 x 6 H2O 1.998e-05 g/l MnCl2 x 4 H2O Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
20651 | positive | growth | 25 | mesophilic |
30839 | positive | growth | 08-30 | |
30839 | positive | optimum | 22.5 | psychrophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30839 | positive | growth | 3.8-7.3 | acidophile |
30839 | positive | optimum | 6.1 |
Physiology and metabolism
oxygen tolerance
- @ref: 30839
- oxygen tolerance: aerobe
halophily
- @ref: 30839
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-0.1 %
Isolation, sampling and environmental information
isolation
- @ref: 20651
- sample type: acidic Sphagnum peat bog
- host species: Sphagnum
- geographic location: Karelia, island Valaam, bank of the bog lake Germanovskoe (61° 22' N 31° 07' E)
- country: Russia
- origin.country: RUS
- continent: Europe
- latitude: 61.3667
- longitude: 31.1167
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Wetland (Swamp) |
#Host | #Plants | #Peat moss |
#Condition | #Acidic |
Safety information
risk assessment
- @ref: 20651
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 20651
- description: Methylomonas paludis partial 16S rRNA gene, type strain DSM 24973T
- accession: HE801216
- length: 1435
- database: ena
- NCBI tax ID: 1173101
GC content
@ref | GC-content | method |
---|---|---|
20651 | 48.5 | thermal denaturation, midpoint method (Tm) |
30839 | 48.5 |
External links
@ref: 20651
culture collection no.: DSM 24973, VKM B-2745
straininfo link
- @ref: 90507
- straininfo: 406151
literature
- topic: Phylogeny
- Pubmed-ID: 23159751
- title: Methylomonas paludis sp. nov., the first acid-tolerant member of the genus Methylomonas, from an acidic wetland.
- authors: Danilova OV, Kulichevskaya IS, Rozova ON, Detkova EN, Bodelier PLE, Trotsenko YA, Dedysh SN
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.045658-0
- year: 2012
- mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Methane/metabolism, Methanol/metabolism, Methylomonas/*classification/enzymology/genetics/isolation & purification, Molecular Sequence Data, Oxygenases/genetics, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Sphagnopsida/*microbiology, *Wetlands
- topic2: Metabolism
Reference
@id | authors | title | doi/url | catalogue | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
20651 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24973 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24973) | |||
30839 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 10.1128/mSphere.00237-17 | 27169 | 28776041 | |
90507 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406151.1 |