Strain identifier

BacDive ID: 132151

Type strain: Yes

Species: Methylomonas paludis

Strain Designation: MG30

Strain history: <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; MG30 <- I. S. Kulichevskaya

NCBI tax ID(s): 1173101 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 20651

BacDive-ID: 132151

DSM-Number: 24973

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Methylomonas paludis MG30 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from acidic Sphagnum peat bog.

NCBI tax id

  • NCBI tax id: 1173101
  • Matching level: species

strain history

  • @ref: 20651
  • history: <- S. N. Dedysh, Winogradsky Inst. Microbiol., RAS, Moscow, Russia; MG30 <- I. S. Kulichevskaya

doi: 10.13145/bacdive132151.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Methylococcales
  • family: Methylococcaceae
  • genus: Methylomonas
  • species: Methylomonas paludis
  • full scientific name: Methylomonas paludis Danilova et al. 2013

@ref: 20651

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Methylococcales

family: Methylococcaceae

genus: Methylomonas

species: Methylomonas paludis

full scientific name: Methylomonas paludis Danilova et al. 2013

strain designation: MG30

type strain: yes

Morphology

cell morphology

  • @ref: 30839
  • gram stain: negative
  • cell length: 2.5 µm
  • cell width: 1.25 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30839
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 20651
  • name: LM-MEDIUM (DSMZ Medium 1347)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1347
  • composition: Name: M2-MEDIUM (DSMZ Medium 1347) Composition: KNO3 0.24975 g/l KH2PO4 0.0999001 g/l MgSO4 x 7 H2O 0.04995 g/l NaCl 0.01998 g/l CaCl2 x 2 H2O 0.00999001 g/l EDTA 0.00499501 g/l FeSO4 x 7 H2O 0.001998 g/l CoCl2 x 6 H2O 0.0001998 g/l CuCl2 x 5 H2O 9.99001e-05 g/l ZnSO4 x 7 H2O 9.99001e-05 g/l Na2MoO4 2.997e-05 g/l NiCl2 x 6 H2O 1.998e-05 g/l MnCl2 x 4 H2O Distilled water

culture temp

@refgrowthtypetemperaturerange
20651positivegrowth25mesophilic
30839positivegrowth08-30
30839positiveoptimum22.5psychrophilic

culture pH

@refabilitytypepHPH range
30839positivegrowth3.8-7.3acidophile
30839positiveoptimum6.1

Physiology and metabolism

oxygen tolerance

  • @ref: 30839
  • oxygen tolerance: aerobe

halophily

  • @ref: 30839
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-0.1 %

Isolation, sampling and environmental information

isolation

  • @ref: 20651
  • sample type: acidic Sphagnum peat bog
  • host species: Sphagnum
  • geographic location: Karelia, island Valaam, bank of the bog lake Germanovskoe (61° 22' N 31° 07' E)
  • country: Russia
  • origin.country: RUS
  • continent: Europe
  • latitude: 61.3667
  • longitude: 31.1167

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Wetland (Swamp)
#Host#Plants#Peat moss
#Condition#Acidic

Safety information

risk assessment

  • @ref: 20651
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20651
  • description: Methylomonas paludis partial 16S rRNA gene, type strain DSM 24973T
  • accession: HE801216
  • length: 1435
  • database: ena
  • NCBI tax ID: 1173101

GC content

@refGC-contentmethod
2065148.5thermal denaturation, midpoint method (Tm)
3083948.5

External links

@ref: 20651

culture collection no.: DSM 24973, VKM B-2745

straininfo link

  • @ref: 90507
  • straininfo: 406151

literature

  • topic: Phylogeny
  • Pubmed-ID: 23159751
  • title: Methylomonas paludis sp. nov., the first acid-tolerant member of the genus Methylomonas, from an acidic wetland.
  • authors: Danilova OV, Kulichevskaya IS, Rozova ON, Detkova EN, Bodelier PLE, Trotsenko YA, Dedysh SN
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.045658-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Hydrogen-Ion Concentration, Methane/metabolism, Methanol/metabolism, Methylomonas/*classification/enzymology/genetics/isolation & purification, Molecular Sequence Data, Oxygenases/genetics, *Phylogeny, RNA, Ribosomal, 16S/genetics, Russia, Sequence Analysis, DNA, Sphagnopsida/*microbiology, *Wetlands
  • topic2: Metabolism

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
20651Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-24973Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24973)
30839Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172716928776041
90507Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID406151.1