Strain identifier

BacDive ID: 132143

Type strain: Yes

Species: Enterococcus ureilyticus

Strain history: <- CCM <- I. Sedlácek, CCM; CCM 4629

NCBI tax ID(s): 1131292 (species)

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General

@ref: 23933

BacDive-ID: 132143

DSM-Number: 102981

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, ovoid-shaped

description: Enterococcus ureilyticus DSM 102981 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from drinking water.

NCBI tax id

  • NCBI tax id: 1131292
  • Matching level: species

strain history

  • @ref: 23933
  • history: <- CCM <- I. Sedlácek, CCM; CCM 4629

doi: 10.13145/bacdive132143.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Enterococcaceae
  • genus: Enterococcus
  • species: Enterococcus ureilyticus
  • full scientific name: Enterococcus ureilyticus Sedlá?ek et al. 2013

@ref: 23933

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Enterococcaceae

genus: Enterococcus

species: Enterococcus ureilyticus

full scientific name: Enterococcus ureilyticus Sedlá?ek et al. 2013

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
30651positiveovoid-shapedno
69480positive100
69480no96.177

pigmentation

  • @ref: 30651
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
23933TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
23933COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
23933positivegrowth37mesophilic
30651positivegrowth10-42
30651positiveoptimum26mesophilic

culture pH

  • @ref: 30651
  • ability: positive
  • type: optimum
  • pH: 9.6
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

  • @ref: 30651
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
30651no
69481yes99
69480no99.951

halophily

  • @ref: 30651
  • salt: NaCl
  • growth: positive
  • tested relation: optimum
  • concentration: 6.5 %

observation

  • @ref: 30651
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3065117057cellobiose+carbon source
3065128757fructose+carbon source
3065117234glucose+carbon source
3065117754glycerol+carbon source
3065117596inosine+carbon source
3065117306maltose+carbon source
3065137684mannose+carbon source
3065137657methyl D-glucoside+carbon source
30651506227N-acetylglucosamine+carbon source
3065151850methyl pyruvate+carbon source
3065133942ribose+carbon source
3065117814salicin+carbon source
3065117992sucrose+carbon source
3065117748thymidine+carbon source
3065127082trehalose+carbon source
3065116704uridine+carbon source
306514853esculin+hydrolysis
6838129016arginine-hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol+builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose+builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin+builds acid from
68381606565hippurate+hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose+builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: +

enzymes

@refvalueactivityec
30651acid phosphatase+3.1.3.2
30651urease+3.5.1.5
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase+3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
23933-+---+/-++--++/-+--++--++++--+-++---

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
23933drinking waterFrydek-MistekCzech RepublicCZEEurope
58333Drinking waterFrydek-MístekCzech RepublicCZEEurope1997

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Freshwater

Sequence information

16S sequences

  • @ref: 23933
  • description: Enterococcus ureilyticus 16S rRNA gene, strain CCM4629
  • accession: AJ276352
  • length: 1528
  • database: ena
  • NCBI tax ID: 1131292

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Enterococcus ureilyticus LMG 26676GCA_001730315contigncbi1131292
66792Enterococcus ureilyticus CCUG 48799GCA_002806915contigncbi1131292
66792Enterococcus ureilyticus DSM 102981GCA_016908995contigncbi1131292
66792Enterococcus ureilyticus strain CCUG 487991131292.4wgspatric1131292
66792Enterococcus ureilyticus strain DSM 1029811131292.5wgspatric1131292
66792Enterococcus ureilyticus strain LMG 266761131292.3wgspatric1131292
66792Enterococcus ureilyticus DSM 1029812901250893draftimg1131292

GC content

@refGC-content
3065136.3
2393336.2

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes99no
motileno95.358yes
flagellatedno96.515yes
gram-positiveyes94.064no
anaerobicno96.754yes
aerobicno93.232yes
halophileyes81.78yes
spore-formingno87.544yes
glucose-utilyes88.121no
thermophileno99.674no
glucose-fermentyes85.539no

External links

@ref: 23933

culture collection no.: DSM 102981, CCM 4629, CCUG 48799, LMG 26676

straininfo link

  • @ref: 90499
  • straininfo: 66357

literature

  • topic: Phylogeny
  • Pubmed-ID: 22523160
  • title: Enterococcus ureilyticus sp. nov. and Enterococcus rotai sp. nov., two urease-producing enterococci from the environment.
  • authors: Sedlacek I, Holochova P, Maslanova I, Kosina M, Sproer C, Bryndova H, Vandamme P, Rudolf I, Hubalek Z, Svec P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.041152-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, Czech Republic, DNA, Bacterial/genetics, Drinking Water/microbiology, Enterococcus/*classification/genetics/isolation & purification, Environmental Microbiology, Genes, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Urease/*biosynthesis
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogueID_cross_referencepubmed
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23933Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102981Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102981)
30651Barberan A, Caceres Velazquez H, Jones S, Fierer N.Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information10.1128/mSphere.00237-172698228776041
58333Curators of the CCUGhttps://www.ccug.se/strain?id=48799Culture Collection University of Gothenburg (CCUG) (CCUG 48799)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68381Automatically annotated from API rID32STR
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
90499Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID66357.1