Strain identifier
BacDive ID: 132111
Type strain: 
Species: Lysinibacillus sp.
Strain Designation: A1
Strain history: <- J.-W. Chen, Univ. of Malaya, Kuala Lumpur, Malaysia; A1
NCBI tax ID(s): 1869345 (species)
version 9.1 (current version)
General
@ref: 23901
BacDive-ID: 132111
DSM-Number: 100973
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, Gram-positive
description: Lysinibacillus sp. A1 is a spore-forming, Gram-positive bacterium that was isolated from soil surface.
NCBI tax id
- NCBI tax id: 1869345
- Matching level: species
strain history
- @ref: 23901
- history: <- J.-W. Chen, Univ. of Malaya, Kuala Lumpur, Malaysia; A1
doi: 10.13145/bacdive132111.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Lysinibacillus
- species: Lysinibacillus sp.
- full scientific name: Lysinibacillus Ahmed et al. 2007
@ref: 23901
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Caryophanaceae
genus: Lysinibacillus
species: Lysinibacillus sp.
full scientific name: Lysinibacillus sp.
strain designation: A1
type strain: no
Culture and growth conditions
culture medium
- @ref: 23901
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 23901
- growth: positive
- type: growth
- temperature: 30
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 90.984
Isolation, sampling and environmental information
isolation
- @ref: 23901
- sample type: soil surface
- geographic location: Rimba Ilmu, Kuala Lumpur
- country: Malaysia
- origin.country: MYS
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
16S sequences
- @ref: 23901
- description: Lysinibacillus fusiformis strain A1 16S ribosomal RNA gene, partial sequence
- accession: JX028237.1
- length: 1500
- database: nuccore
- NCBI tax ID: 28031
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Lysinibacillus sp. A1 | GCA_000801965 | contig | ncbi | 1571920 |
| 66792 | Lysinibacillus sp. A1 | 1571920.3 | wgs | patric | 1571920 |
| 66792 | Lysinibacillus sp. A1 | 2627853827 | draft | img | 1571920 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 72.294 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 98.411 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 90.984 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 81.783 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 91.598 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 84.115 | no |
External links
@ref: 23901
culture collection no.: DSM 100973
straininfo link
- @ref: 90467
- straininfo: 401052
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23901 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100973 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100973) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90467 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401052.1 |