Archive BacDiveID:10.13145/bacdive132100.20230509.8.1

Strain identifier

BacDive ID: 132100

Type strain:

Species: Huintestinicola butyrica

Strain Designation: Sanger 06, Sanger_06

Strain history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_06

NCBI tax ID(s): 41978 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23890

BacDive-ID: 132100

DSM-Number: 102115

keywords: genome sequence, Bacteria, mesophilic

description: Huintestinicola butyrica Sanger 06 is a mesophilic bacterium that was isolated from faeces from healthy human.

NCBI tax id

NCBI tax id: 41978
Matching level: species

strain history

@ref: 23890
history: <- H. Browne, Wellcome Trust Sanger Institute, Hinxton, Cambridgeshire, United Kingdom; Sanger_06

doi: 10.13145/bacdive132100.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacillota
domain: Bacteria
phylum: Bacillota
class: Clostridia
order: Eubacteriales
family: Oscillospiraceae
genus: Huintestinicola
species: Huintestinicola butyrica
full scientific name: Huintestinicola butyrica Hitch et al. 2022

@ref: 23890

domain: Bacteria

phylum: Bacillota

class: Clostridia

order: Eubacteriales

family: Oscillospiraceae

genus: Huintestinicola

species: Huintestinicola butyrica

full scientific name: Huintestinicola butyrica Hitch et al. 2022

strain designation: Sanger 06, Sanger_06

type strain: yes

Culture and growth conditions

culture medium

@ref: 23890
name: RUMINOCOCCUS ALBUS MEDIUM (DSMZ Medium 436)
growth: yes
link: https://mediadive.dsmz.de/medium/436
composition: Name: RUMINOCOCCUS ALBUS MEDIUM (DSMZ Medium 436) Composition: Tryptone 5.0 g/l Na2CO3 4.0 g/l Glucose 3.0 g/l Yeast extract 2.0 g/l Cellobiose 2.0 g/l (NH4)2SO4 0.8 g/l L-Cysteine HCl x H2O 0.5 g/l NaCl 0.48 g/l K2HPO4 0.24 g/l KH2PO4 0.24 g/l MgSO4 x 7 H2O 0.1 g/l CaCl2 x 7 H2O 0.064 g/l Resazurin 0.001 g/l Isovaleric acid 2-Methylbutyric acid Isobutyric acid Distilled water

culture temp

@ref: 23890
growth: positive
type: growth
temperature: 37
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23890
sample type: faeces from healthy human
geographic location: Cambridgeshire
country: United Kingdom
origin.country: GBR
continent: Europe

isolation source categories

Cat1	Cat2	Cat3
#Host	#Human
#Host Body Product	#Gastrointestinal tract	#Feces (Stool)

Sequence information

Genome sequences

@ref: 66792
description: Huintestinicola butyrica Sanger_06
accession: GCA_025567215
assembly level: scaffold
database: ncbi
NCBI tax ID: 2981728

Genome-based predictions

predictions

trait	prediction	confidence	training_data
motile	no	92.88	no
flagellated	no	96.577	no
gram-positive	yes	87.486	no
anaerobic	yes	99.999	no
aerobic	no	98.804	no
halophile	no	88.217	no
spore-forming	no	79.4	no
glucose-ferment	yes	67.665	no
thermophile	no	93.959	no
glucose-util	yes	76.311	no

External links

@ref: 23890

culture collection no.: DSM 102115, JCM 34817

straininfo link

@ref: 90456
straininfo: 397460

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23890	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102115	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102115)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90456	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID397460.1