Strain identifier

BacDive ID: 1321

Type strain: Yes

Species: Robertmurraya beringensis

Strain history: <- Y. U. Yong, Polar Res. Institute of China, Shanghai, PR China; BR035

NCBI tax ID(s): 641660 (species)

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General

@ref: 16403

BacDive-ID: 1321

DSM-Number: 22571

keywords: 16S sequence, Bacteria

description: Robertmurraya beringensis DSM 22571 is a bacterium that was isolated from seawater at 10 m depth.

NCBI tax id

  • NCBI tax id: 641660
  • Matching level: species

strain history

  • @ref: 16403
  • history: <- Y. U. Yong, Polar Res. Institute of China, Shanghai, PR China; BR035

doi: 10.13145/bacdive1321.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Caryophanales
  • family: Bacillaceae
  • genus: Robertmurraya
  • species: Robertmurraya beringensis
  • full scientific name: Robertmurraya beringensis (Yu et al. 2012) Gupta et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Bacillus beringensis

@ref: 16403

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Bacillales

family: Bacillaceae

genus: Robertmurraya

species: Robertmurraya beringensis

full scientific name: Robertmurraya beringensis (Yu et al. 2012) Gupta et al. 2020

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 16403
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

  • @ref: 16403
  • growth: positive
  • type: growth
  • temperature: 30

Isolation, sampling and environmental information

isolation

  • @ref: 16403
  • sample type: seawater at 10 m depth
  • geographic location: Bering Sea (54°59'50'' N 171°49'25'' E)
  • continent: Australia and Oceania
  • latitude: 54.9972
  • longitude: 172

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Marine

taxonmaps

  • @ref: 69479
  • File name: preview.99_39042.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_264;97_3400;98_4288;99_39042&stattab=map
  • Last taxonomy: Bacillus beringensis
  • 16S sequence: FJ889576
  • Sequence Identity:
  • Total samples: 407
  • soil counts: 165
  • aquatic counts: 64
  • animal counts: 171
  • plant counts: 7

Safety information

risk assessment

  • @ref: 16403
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16403
  • description: Bacillus beringensis strain BR035 16S ribosomal RNA gene, partial sequence
  • accession: FJ889576
  • length: 1516
  • database: nuccore
  • NCBI tax ID: 641660

GC content

  • @ref: 16403
  • GC-content: 37.8
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 16403

culture collection no.: DSM 22571, CGMCC 1.9126, BR 035

straininfo link

  • @ref: 70970
  • straininfo: 400537

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny20963491Bacillus beringensis sp. nov., a psychrotolerant bacterium isolated from the Bering Sea.Yu Y, Li HR, Zeng YX, Chen BAntonie Van Leeuwenhoek10.1007/s10482-010-9523-42010Bacillus/classification/*genetics/*isolation & purification, Molecular Sequence Data, RNA, Ribosomal, 16S/genetics, Seawater/*microbiologyGenetics
Phylogeny26115993Bacillus coreaensis sp. nov.: a xylan-hydrolyzing bacterium isolated from the soil of Jeju Island, Republic of Korea.Chi WJ, Youn YS, Park JS, Hong SKJ Microbiol10.1007/s12275-015-5140-22015Bacillus/classification/*isolation & purification/*metabolism/physiology, Base Composition, Diaminopimelic Acid/analysis, Fatty Acids/analysis, Hydrolysis, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/analysis, Xylans/*metabolismMetabolism

Reference

@idauthorscataloguedoi/urltitle
16403Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22571)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22571
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
70970Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400537.1StrainInfo: A central database for resolving microbial strain identifiers