Archive BacDiveID:10.13145/bacdive132086.20230509.8.1

Strain identifier

BacDive ID: 132086

Type strain:

Species: Phenylobacterium sp.

Strain Designation: Root77

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root77 <- Y. Bai

NCBI tax ID(s): 1871053 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23876

BacDive-ID: 132086

DSM-Number: 102497

keywords: genome sequence, Bacteria, mesophilic

description: Phenylobacterium sp. Root77 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

NCBI tax id: 1871053
Matching level: species

strain history

@ref: 23876
history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root77 <- Y. Bai

doi: 10.13145/bacdive132086.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Caulobacterales
family: Caulobacteraceae
genus: Phenylobacterium
species: Phenylobacterium sp.
full scientific name: Phenylobacterium Lingens et al. 1985

@ref: 23876

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Caulobacteraceae

genus: Phenylobacterium

species: Phenylobacterium sp.

full scientific name: Phenylobacterium sp.

strain designation: Root77

type strain: no

Culture and growth conditions

culture medium

@ref: 23876
name: NUTRIENT AGAR (DSMZ Medium 1)
growth: yes
link: https://mediadive.dsmz.de/medium/1
composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@ref: 23876
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23876
sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
host species: Arabidopsis thaliana
geographic location: Cologne (50.958N 6.856E)
country: Germany
origin.country: DEU
continent: Europe
latitude: 50.958
longitude: 6.856

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Phenylobacterium sp. Root77	GCA_001428705	scaffold	ncbi	1736599
66792	Phenylobacterium sp. Root77	1736599.3	wgs	patric	1736599
66792	Phenylobacterium sp. Root77	2643221614	draft	img	1736599

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	81.158	no
gram-positive	no	98.132	no
anaerobic	no	98.069	no
aerobic	yes	92.678	no
halophile	no	94.897	no
spore-forming	no	95.696	no
thermophile	no	98.852	no
glucose-util	yes	76.16	no
motile	yes	84.569	no
glucose-ferment	no	93.591	no

External links

@ref: 23876

culture collection no.: DSM 102497

straininfo link

@ref: 90442
straininfo: 399827

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23876	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102497	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102497)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90442	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID399827.1