Strain identifier
BacDive ID: 132068
Type strain: 
Species: Frigoribacterium sp.
Strain Designation: Leaf44
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf44 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 1880915 (species)
General
@ref: 23859
BacDive-ID: 132068
DSM-Number: 102608
keywords: genome sequence, Bacteria, mesophilic
description: Frigoribacterium sp. Leaf44 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 1880915
- Matching level: species
strain history
- @ref: 23859
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf44 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive132068.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Frigoribacterium
- species: Frigoribacterium sp.
- full scientific name: Frigoribacterium Kämpfer et al. 2000
@ref: 23859
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Frigoribacterium
species: Frigoribacterium sp.
full scientific name: Frigoribacterium sp.
strain designation: Leaf44
type strain: no
Culture and growth conditions
culture medium
- @ref: 23859
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 23859
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23859
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Hoengg (47.4090306N 8.470169444E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.409
- longitude: 8.4702
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Frigoribacterium sp. Leaf44 | GCA_001421865 | scaffold | ncbi | 1736220 |
| 66792 | Frigoribacterium sp. Leaf44 | 1736220.3 | wgs | patric | 1736220 |
| 66792 | Frigoribacterium sp. Leaf44 | 2643221770 | draft | img | 1736220 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 92.848 | no |
| gram-positive | yes | 92.172 | no |
| anaerobic | no | 99.575 | no |
| aerobic | yes | 91.37 | no |
| halophile | no | 72.439 | no |
| spore-forming | no | 94.152 | no |
| thermophile | no | 99.287 | yes |
| glucose-util | yes | 87.754 | no |
| motile | yes | 57.595 | no |
| glucose-ferment | no | 83.651 | no |
External links
@ref: 23859
culture collection no.: DSM 102608
straininfo link
- @ref: 90426
- straininfo: 399587
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23859 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102608 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102608) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90426 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID399587.1 |