Strain identifier

BacDive ID: 132062

Type strain: No

Species: Sebaldella termitidis

Strain Designation: 151002920

Strain history: <- T. Eisenberg, Landesbetrieb Hess. Landeslabor, Giessen, Germany; 151002920

NCBI tax ID(s): 826 (species)

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General

@ref: 23853

BacDive-ID: 132062

DSM-Number: 100379

keywords: 16S sequence, Bacteria, mesophilic

description: Sebaldella termitidis 151002920 is a mesophilic bacterium that was isolated from Root sepsis associated with insect-dwelling Sebaldella termitidis in a lesser dwarf lemur .

NCBI tax id

  • NCBI tax id: 826
  • Matching level: species

strain history

  • @ref: 23853
  • history: <- T. Eisenberg, Landesbetrieb Hess. Landeslabor, Giessen, Germany; 151002920

doi: 10.13145/bacdive132062.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/fusobacteriota
  • domain: Bacteria
  • phylum: Fusobacteriota
  • class: Fusobacteriia
  • order: Fusobacteriales
  • family: Leptotrichiaceae
  • genus: Sebaldella
  • species: Sebaldella termitidis
  • full scientific name: Sebaldella termitidis (Sebald 1962) Collins and Shah 1986

  • synonyms

    • @ref: 20215
    • synonym: Bacteroides termitidis

@ref: 23853

domain: Bacteria

phylum: Fusobacteria

class: Fusobacteriia

order: Fusobacteriales

family: Leptotrichiaceae

genus: Sebaldella

species: Sebaldella termitidis

full scientific name: Sebaldella termitidis (Sebald 1962) Collins and Shah 1986

strain designation: 151002920

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
23853FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203)yeshttps://mediadive.dsmz.de/medium/1203Name: FASTIDIOUS ANAEROBE AGAR (DSMZ Medium 1203) Composition: Horse blood 100.0 g/l Fastidious Anaerobe Agar 45.7 g/l Distilled water
23853FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a)yeshttps://mediadive.dsmz.de/medium/1203aName: FASTIDIOUS ANAEROBE BROTH (DSMZ Medium 1203a) Composition: Fastidious Anaerobe Basal Broth 35.4 g/l Distilled water

culture temp

  • @ref: 23853
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836727082trehalose+builds acid from
6836762345L-rhamnose-builds acid from
6836730911sorbitol-builds acid from
6836716634raffinose-builds acid from
683676731melezitose-builds acid from
6836716024D-mannose+builds acid from
6836717057cellobiose+builds acid from
6836717754glycerol-builds acid from
683674853esculin+hydrolysis
683675291gelatin-hydrolysis
6836730849L-arabinose-builds acid from
6836765327D-xylose+builds acid from
6836717814salicin+builds acid from
6836717306maltose+builds acid from
6836717992sucrose+builds acid from
6836717716lactose-builds acid from
6836716899D-mannitol+builds acid from
6836717634D-glucose+builds acid from
6836716199urea-hydrolysis
6836727897tryptophan-energy source
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
6836735581indoleno
6838035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole test
6838035581indole-
6836735581indole-

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase+3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase+3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase+3.2.1.21
68380alpha-glucosidase-3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
68367beta-glucosidase+3.2.1.21
68367gelatinase-
68367urease-3.5.1.5

API 20A

@refINDUREGLUMANLACSACMALSALXYLARAGELESCGLYCELMNEMLZRAFSORRHATRE
23853--++-++++--+-++----+

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
23853------+--++-----+------------

Isolation, sampling and environmental information

isolation

  • @ref: 23853
  • sample type: Root sepsis associated with insect-dwelling Sebaldella termitidis in a lesser dwarf lemur (Cheirogaleus medius)
  • host species: Sebaldella termitidis;Cheirogaleus medius
  • geographic location: Frankfurt, Zoo
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Mammals#Primates
#Host#Microbial#Bacteria
#Host Body-Site#Oral cavity and airways#Root (Tooth)

taxonmaps

  • @ref: 69479
  • File name: preview.99_2106.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_296;96_1156;97_1359;98_1648;99_2106&stattab=map
  • Last taxonomy: Sebaldella termitidis subclade
  • 16S sequence: KR150994
  • Sequence Identity:
  • Total samples: 7898
  • soil counts: 194
  • aquatic counts: 6148
  • animal counts: 1464
  • plant counts: 92

Sequence information

16S sequences

  • @ref: 23853
  • description: Sebaldella termitidis strain 151002920 16S ribosomal RNA gene, partial sequence
  • accession: KR150994
  • length: 1455
  • database: ena
  • NCBI tax ID: 826

External links

@ref: 23853

culture collection no.: DSM 100379

straininfo link

  • @ref: 90420
  • straininfo: 401043

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23853Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-100379Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100379)
68367Automatically annotated from API 20A
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
90420Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID401043.1