Strain identifier
BacDive ID: 132053
Type strain: 
Species: Nitrosomonas communis
Strain Designation: Nm2
Strain history: <- A. Pommerening-Röser, Universitaet Hamburg, Dept. Mikrobiologie und Biotechnologie <- H. Harms and H.-P. Koops, Institut f. Allgemeine Botanik, Univ. Hamburg; Nm2
NCBI tax ID(s): 44574 (species)
version 8.1 (current version)
General
@ref: 23844
BacDive-ID: 132053
DSM-Number: 28436
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Nitrosomonas communis Nm2 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 44574
- Matching level: species
strain history
- @ref: 23844
- history: <- A. Pommerening-Röser, Universitaet Hamburg, Dept. Mikrobiologie und Biotechnologie <- H. Harms and H.-P. Koops, Institut f. Allgemeine Botanik, Univ. Hamburg; Nm2
doi: 10.13145/bacdive132053.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Nitrosomonadales
- family: Nitrosomonadaceae
- genus: Nitrosomonas
- species: Nitrosomonas communis
- full scientific name: Nitrosomonas communis Koops et al. 1991
@ref: 23844
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Nitrosomonadales
family: Nitrosomonadaceae
genus: Nitrosomonas
species: Nitrosomonas communis
full scientific name: Nitrosomonas communis Koops et al. 2001
strain designation: Nm2
type strain: yes
Culture and growth conditions
culture medium
- @ref: 23844
- name: MEDIUM FOR AMMONIA OXIDIZING BACTERIA (STRAINS FROM SOIL) (DSMZ Medium 1583)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1583
- composition: Name: MEDIUM FOR AMMONIA OXIDIZING BACTERIA (STRAINS FROM SOIL) (DSMZ Medium 1583) Composition: NaCl 0.584 g/l NH4Cl 0.535 g/l CaCl2 x 2 H2O 0.147 g/l KCl 0.074 g/l KH2PO4 0.054 g/l MgSO4 x 7 H2O 0.049 g/l Cresol red 0.001 g/l FeSO4 x 7 H2O 0.000973 g/l H3BO3 4.9e-05 g/l MnSO4 x 4 H2O 4.5e-05 g/l ZnSO4 x 7 H2O 4.3e-05 g/l (NH4)6Mo7O24 x 4 H2O 3.7e-05 g/l CuSO4 x 5 H2O 2.5e-05 g/l HCl Distilled water
culture temp
- @ref: 23844
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23844
- sample type: soil
- geographic location: Corfu
- country: Greece
- origin.country: GRC
- continent: Europe
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_2347.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_316;96_1268;97_1503;98_1830;99_2347&stattab=map
- Last taxonomy: Nitrosomonas communis subclade
- 16S sequence: NR_104887
- Sequence Identity:
- Total samples: 8839
- soil counts: 6115
- aquatic counts: 1750
- animal counts: 330
- plant counts: 644
Safety information
risk assessment
- @ref: 23844
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 23844 | Nitrosomonas communis partial 16S rRNA gene, strain Nm2 | HE856821 | 1462 | ena | 44574 |
| 23844 | Nitrosomonas communis strain Nm2 16S ribosomal RNA, partial sequence | NR_104887 | 1462 | nuccore | 44574 |
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nitrosomonas communis Nm2 | GCA_001007935 | complete | ncbi | 44574 |
| 66792 | Nitrosomonas communis Nm2 | GCA_008124795 | contig | ncbi | 44574 |
| 66792 | Nitrosomonas communis Nm2 | 2627854142 | complete | img | 44574 |
| 66792 | Nitrosomonas communis Nm2 | 2675903045 | draft | img | 44574 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 83.712 | no |
| flagellated | no | 97.191 | no |
| gram-positive | no | 96.883 | no |
| anaerobic | no | 97.48 | no |
| aerobic | yes | 56.236 | no |
| halophile | no | 89.83 | no |
| spore-forming | no | 88.575 | no |
| thermophile | no | 98.627 | yes |
| glucose-util | yes | 61.354 | no |
| glucose-ferment | no | 84.092 | no |
External links
@ref: 23844
culture collection no.: DSM 28436
Reference
| @id | authors | title | doi/url | catalogue | journal | pubmed |
|---|---|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |||
| 23844 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28436 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28436) | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | 10.1093/nar/gkaa1025 | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ |