Strain identifier
BacDive ID: 132045
Type strain: 
Species: Williamsia sp.
Strain Designation: Leaf354
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf354 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 1872085 (species)
General
@ref: 23836
BacDive-ID: 132045
DSM-Number: 102764
keywords: genome sequence, Bacteria, mesophilic
description: Williamsia sp. Leaf354 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 1872085
- Matching level: species
strain history
- @ref: 23836
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf354 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive132045.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Gordoniaceae
- genus: Williamsia
- species: Williamsia sp.
- full scientific name: Williamsia Kämpfer et al. 1999
@ref: 23836
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Gordoniaceae
genus: Williamsia
species: Williamsia sp.
full scientific name: Williamsia sp.
strain designation: Leaf354
type strain: no
Morphology
multimedia
| @ref | multimedia content | caption | intellectual property rights |
|---|---|---|---|
| 23836 | https://www.dsmz.de/microorganisms/photos/DSM_102764.jpg | Medium 535 28°C | © Leibniz-Institut DSMZ |
| 23836 | https://www.dsmz.de/microorganisms/photos/DSM_102764-1.jpg | © Leibniz-Institut DSMZ |
Culture and growth conditions
culture medium
- @ref: 23836
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 23836
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23836
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Brugg (47.4816806N 8.217547222E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.4817
- longitude: 8.2176
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Williamsia sp. Leaf354 | GCA_001424365 | contig | ncbi | 1736349 |
| 66792 | Williamsia sp. Leaf354 | 1736349.3 | wgs | patric | 1736349 |
| 66792 | Williamsia sp. Leaf354 | 2643221812 | draft | img | 1736349 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 92.539 | no |
| gram-positive | yes | 88.297 | no |
| anaerobic | no | 99.035 | no |
| aerobic | yes | 85.093 | no |
| halophile | no | 83.437 | no |
| spore-forming | no | 83.919 | no |
| glucose-util | yes | 89.483 | no |
| flagellated | no | 97.695 | no |
| thermophile | no | 99.161 | no |
| glucose-ferment | no | 90.326 | no |
External links
@ref: 23836
culture collection no.: DSM 102764
straininfo link
- @ref: 90408
- straininfo: 407211
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23836 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102764 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102764) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90408 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407211.1 |