Strain identifier
BacDive ID: 132019
Type strain: 
Species: Inediibacterium massiliense
Strain Designation: Mt12
Strain history: <- S. Khelaifia, Timone Hospital, Marseille, France; Mt12 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}
NCBI tax ID(s): 1658111 (species)
version 8.1 (current version)
General
@ref: 23810
BacDive-ID: 132019
DSM-Number: 100590
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, motile
description: Inediibacterium massiliense Mt12 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from stool sample of a 7-month-old girl with Kwashiorkor, a severe form of acute malnutrition.
NCBI tax id
- NCBI tax id: 1658111
- Matching level: species
strain history
- @ref: 23810
- history: <- S. Khelaifia, Timone Hospital, Marseille, France; Mt12 <- Unité de Recherche sur les Maladies Infectieuses et Tropicales Émergentes {2015}
doi: 10.13145/bacdive132019.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Inediibacterium
- species: Inediibacterium massiliense
- full scientific name: Inediibacterium massiliense Alou et al. 2017
@ref: 23810
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Eubacteriales
family: Clostridiaceae
genus: Inediibacterium
species: Inediibacterium massiliense
full scientific name: Inediibacterium massiliense Alou et al. 2017
strain designation: Mt12
type strain: no
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 92.472 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 23810
- name: PY + X MEDIUM (DSMZ Medium 104b)
- growth: yes
- link: https://mediadive.dsmz.de/medium/104b
- composition: Name: PY + X MEDIUM (DSMZ Medium 104b) Composition: Yeast extract 10.0 g/l D-Glucose 5.0 g/l Trypticase peptone 5.0 g/l Meat peptone 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l KH2PO4 0.04 g/l K2HPO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 23810
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
- @ref: 69480
- oxygen tolerance: anaerobe
- confidence: 99.267
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 23810
- sample type: stool sample of a 7-month-old girl with Kwashiorkor, a severe form of acute malnutrition
- country: Senegal
- origin.country: SEN
- continent: Africa
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | #Specimen |
| #Host | #Human | #Child |
| #Host | #Human | #Female |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_4464.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15791;96_2231;97_2702;98_3355;99_4464&stattab=map
- Last taxonomy: Inediibacterium massiliense subclade
- 16S sequence: LN850734
- Sequence Identity:
- Total samples: 6652
- soil counts: 337
- aquatic counts: 1300
- animal counts: 4966
- plant counts: 49
Sequence information
16S sequences
- @ref: 23810
- description: Clostridiaceae bacterium mt12 partial 16S rRNA gene, strain mt12
- accession: LN850734
- length: 1491
- database: ena
- NCBI tax ID: 1658111
Genome sequences
- @ref: 66792
- description: Inediibacterium massiliense Mt12
- accession: GCA_001282725
- assembly level: scaffold
- database: ncbi
- NCBI tax ID: 1658111
GC content
- @ref: 23810
- GC-content: 30.45
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 80.462 | no |
| flagellated | no | 64.743 | no |
| gram-positive | no | 50.937 | no |
| anaerobic | yes | 99.645 | no |
| halophile | no | 82.772 | no |
| spore-forming | yes | 93.818 | no |
| glucose-util | yes | 81.686 | no |
| aerobic | no | 98.469 | no |
| glucose-ferment | no | 54.699 | no |
| thermophile | no | 91.62 | yes |
External links
@ref: 23810
culture collection no.: DSM 100590, CSUR P1907
literature
- topic: Phylogeny
- Pubmed-ID: 28190153
- title: Inediibacterium massiliense gen. nov., sp. nov., a new bacterial species isolated from the gut microbiota of a severely malnourished infant.
- authors: Alou MT, Rathored J, Michelle C, Dubourg G, Andrieu C, Armstrong N, Sokhna C, Diallo A, Raoult D, Fournier PE
- journal: Antonie Van Leeuwenhoek
- DOI: 10.1007/s10482-017-0843-5
- year: 2017
- mesh: Bacterial Typing Techniques, Base Composition, Clostridiaceae/genetics/*isolation & purification, DNA, Bacterial, Fatty Acids, *Gastrointestinal Microbiome, Humans, Infant, *Malnutrition, Phylogeny, *RNA, Ribosomal, 16S, Sequence Analysis, DNA
- topic2: Pathogenicity
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23810 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-100590 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 100590) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 |