Archive BacDiveID:10.13145/bacdive132003.20230509.8.1

Strain identifier

BacDive ID: 132003

Type strain:

Species: Terrabacter sp.

Strain Designation: Root85

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root85 <- Y. Bai

NCBI tax ID(s): 54015 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23795

BacDive-ID: 132003

DSM-Number: 102554

keywords: genome sequence, Bacteria, mesophilic

description: Terrabacter sp. Root85 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

NCBI tax id: 54015
Matching level: species

strain history

@ref: 23795
history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root85 <- Y. Bai

doi: 10.13145/bacdive132003.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/actinomycetota
domain: Bacteria
phylum: Actinomycetota
class: Actinomycetes
order: Micrococcales
family: Intrasporangiaceae
genus: Terrabacter
species: Terrabacter sp.
full scientific name: Terrabacter Collins et al. 1989

@ref: 23795

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Intrasporangiaceae

genus: Terrabacter

species: Terrabacter sp.

full scientific name: Terrabacter sp.

strain designation: Root85

type strain: no

Culture and growth conditions

culture medium

@ref: 23795
name: PP-MEDIUM (DSMZ Medium 513)
growth: yes
link: https://mediadive.dsmz.de/medium/513
composition: Name: PP-MEDIUM (DSMZ Medium 513) Composition: Agar 15.0 g/l Polypeptone 10.0 g/l Yeast extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Distilled water

culture temp

@ref: 23795
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23795
sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
host species: Arabidopsis thaliana
geographic location: Cologne (50.958N 6.856E)
country: Germany
origin.country: DEU
continent: Europe
latitude: 50.958
longitude: 6.856

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Terrabacter sp. Root85	GCA_001429185	scaffold	ncbi	1736603
66792	Terrabacter sp. Root85	1736603.3	wgs	patric	1736603
66792	Terrabacter sp. Root85	2643221711	draft	img	1736603

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	98.658	no
gram-positive	yes	89.638	no
anaerobic	no	99.145	no
aerobic	yes	94.2	no
halophile	no	93.414	no
spore-forming	no	74.465	no
glucose-util	yes	85.284	no
motile	no	96.202	no
thermophile	no	99.227	yes
glucose-ferment	no	92.043	no

External links

@ref: 23795

culture collection no.: DSM 102554

straininfo link

@ref: 90389
straininfo: 404743

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23795	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102554	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102554)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90389	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID404743.1