Strain identifier
BacDive ID: 132003
Type strain: 
Species: Terrabacter sp.
Strain Designation: Root85
Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root85 <- Y. Bai
NCBI tax ID(s): 54015 (species)
version 9.1 (current version)
General
@ref: 23795
BacDive-ID: 132003
DSM-Number: 102554
keywords: genome sequence, Bacteria
description: Terrabacter sp. Root85 is a bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .
NCBI tax id
- NCBI tax id: 54015
- Matching level: species
strain history
- @ref: 23795
- history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root85 <- Y. Bai
doi: 10.13145/bacdive132003.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Intrasporangiaceae
- genus: Terrabacter
- species: Terrabacter sp.
- full scientific name: Terrabacter Collins et al. 1989
@ref: 23795
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Intrasporangiaceae
genus: Terrabacter
species: Terrabacter sp.
full scientific name: Terrabacter sp.
strain designation: Root85
type strain: no
Morphology
cell morphology
- @ref: 69480
- motility: no
- confidence: 91.1
Culture and growth conditions
culture medium
- @ref: 23795
- name: PP-MEDIUM (DSMZ Medium 513)
- growth: yes
- link: https://mediadive.dsmz.de/medium/513
- composition: Name: PP-MEDIUM (DSMZ Medium 513) Composition: Agar 15.0 g/l Polypeptone 10.0 g/l Yeast extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Distilled water
culture temp
- @ref: 23795
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 23795
- sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
- host species: Arabidopsis thaliana
- geographic location: Cologne (50.958N 6.856E)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 50.958
- longitude: 6.856
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Terrabacter sp. Root85 | GCA_001429185 | scaffold | ncbi | 1736603 |
| 66792 | Terrabacter sp. Root85 | 1736603.3 | wgs | patric | 1736603 |
| 66792 | Terrabacter sp. Root85 | 2643221711 | draft | img | 1736603 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 89.223 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.869 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 87.959 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 50.635 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.5 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 91.1 | no |
External links
@ref: 23795
culture collection no.: DSM 102554
straininfo link
- @ref: 90389
- straininfo: 404743
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23795 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102554 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102554) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90389 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404743.1 |