Strain identifier

BacDive ID: 131997

Type strain: No

Species: Streptomyces sp.

Strain Designation: Root55

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root55 <- Y. Bai

NCBI tax ID(s): 1931 (species)

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General

@ref: 23789

BacDive-ID: 131997

DSM-Number: 102550

keywords: genome sequence, Bacteria, mesophilic

description: Streptomyces sp. Root55 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

  • NCBI tax id: 1931
  • Matching level: species

strain history

  • @ref: 23789
  • history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root55 <- Y. Bai

doi: 10.13145/bacdive131997.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Kitasatosporales
  • family: Streptomycetaceae
  • genus: Streptomyces
  • species: Streptomyces sp.
  • full scientific name: Streptomyces Waksman and Henrici 1943 (Approved Lists 1980)

  • synonyms

    @refsynonym
    20215Microechinospora
    20215Carbonactinospora
    20215Actinosporangium
    20215Actinopycnidium
    20215Elytrosporangium
    20215Streptoverticillium
    20215Chainia
    20215Indiella
    20215Actinacidiphila
    20215Kitasatoa
    20215Microellobosporia

@ref: 23789

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Streptomycetaceae

genus: Streptomyces

species: Streptomyces sp.

full scientific name: Streptomyces sp.

strain designation: Root55

type strain: no

Morphology

multimedia

  • @ref: 23789
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102550.jpg
  • caption: Medium 84 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 23789
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 23789
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23789
  • sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
  • host species: Arabidopsis thaliana
  • geographic location: Cologne (50.958N 6.856E)
  • country: Germany
  • origin.country: DEU
  • continent: Europe
  • latitude: 50.958
  • longitude: 6.856

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root (Rhizome)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Streptomyces sp. Root55GCA_001427245scaffoldncbi1736554
66792Streptomyces sp. Root551736554.3wgspatric1736554
66792Streptomyces sp. Root552643221548draftimg1736554

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedno97.829no
gram-positiveyes89.449no
anaerobicno99.264no
aerobicyes93.934no
halophileno90.198no
spore-formingyes93.745no
glucose-utilyes90.703no
motileno92.802no
thermophileno99.089yes
glucose-fermentno89.148no

External links

@ref: 23789

culture collection no.: DSM 102550

straininfo link

  • @ref: 90383
  • straininfo: 398534

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23789Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102550Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102550)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
90383Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398534.1