Archive BacDiveID:10.13145/bacdive131946.20230509.8.1

Strain identifier

BacDive ID: 131946

Type strain:

Species: Sphingomonas sp.

Strain Designation: Leaf4

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf4 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 28214 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23738

BacDive-ID: 131946

DSM-Number: 102729

keywords: genome sequence, Bacteria, mesophilic

description: Sphingomonas sp. Leaf4 is a mesophilic bacterium that was isolated from leaf of wild-type Arabidopsis thaliana.

NCBI tax id

NCBI tax id: 28214
Matching level: species

strain history

@ref: 23738
history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf4 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131946.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Alphaproteobacteria
order: Sphingomonadales
family: Sphingomonadaceae
genus: Sphingomonas
species: Sphingomonas sp.
full scientific name: Sphingomonas Yabuuchi et al. 1990

@ref: 23738

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Pseudomonadales

family: Sphingomonadaceae

genus: Sphingomonas

species: Sphingomonas sp.

full scientific name: Sphingomonas sp.

strain designation: Leaf4

type strain: no

Culture and growth conditions

culture medium

@ref: 23738
name: R2A MEDIUM (DSMZ Medium 830)
growth: yes
link: https://mediadive.dsmz.de/medium/830
composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@ref: 23738
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23738
sample type: leaf of wild-type Arabidopsis thaliana
host species: Arabidopsis thaliana
geographic location: Brugg (47.4816806N 8.217547222E)
country: Switzerland
origin.country: CHE
continent: Europe
latitude: 47.4817
longitude: 8.2176

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Sphingomonas sp. Leaf4 Leaf4	GCA_920939515	contig	ncbi	2876553
66792	Sphingomonas sp. Leaf4	2876553.3	wgs	patric	2876553

Genome-based predictions

predictions

trait	prediction	confidence	training_data
gram-positive	no	96.643	no
anaerobic	no	99.592	no
halophile	no	92.755	no
spore-forming	no	94.789	no
glucose-util	yes	93.024	no
motile	yes	68.389	no
flagellated	no	89.248	no
aerobic	yes	93.184	no
thermophile	no	97.849	no
glucose-ferment	no	92.334	no

External links

@ref: 23738

culture collection no.: DSM 102729

straininfo link

@ref: 90333
straininfo: 405233

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23738	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102729	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102729)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90333	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID405233.1