Strain identifier
BacDive ID: 1319
Type strain: 
Species: Cytobacillus kochii
Strain Designation: G 5690
Strain history: <- H. Seiler, Research Center for Nutrition and Food Sci. (ZIEL), TU Munich, GERMANY <- M. Wenning
NCBI tax ID(s): 859143 (species)
version 8.1 (current version)
General
@ref: 17728
BacDive-ID: 1319
DSM-Number: 24673
keywords: 16S sequence, Bacteria, mesophilic
description: Cytobacillus kochii G 5690 is a mesophilic bacterium that was isolated from manufacturing of pharmaceuticals.
NCBI tax id
- NCBI tax id: 859143
- Matching level: species
strain history
- @ref: 17728
- history: <- H. Seiler, Research Center for Nutrition and Food Sci. (ZIEL), TU Munich, GERMANY <- M. Wenning
doi: 10.13145/bacdive1319.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Cytobacillus
- species: Cytobacillus kochii
- full scientific name: Cytobacillus kochii (Seiler et al. 2012) Patel and Gupta 2020
synonyms
- @ref: 20215
- synonym: Bacillus kochii
@ref: 17728
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Cytobacillus
species: Cytobacillus kochii
full scientific name: Cytobacillus kochii (Seiler et al. 2012) Patel and Gupta 2020
strain designation: G 5690
type strain: no
Culture and growth conditions
culture medium
- @ref: 17728
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 17728
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 17728
- sample type: manufacturing of pharmaceuticals
- geographic location: Sachsen-Anhalt, Dessau
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
- Cat1: #Infection
- Cat2: #Medical product
Safety information
risk assessment
- @ref: 17728
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17728
- description: Bacillus kochii partial 16S rRNA gene, strain WCC 4581, isolate G 5690
- accession: FR845720
- length: 1511
- database: ena
- NCBI tax ID: 859143
External links
@ref: 17728
culture collection no.: DSM 24673, WCC 4581
straininfo link
- @ref: 70969
- straininfo: 408260
literature
- topic: Phylogeny
- Pubmed-ID: 21705449
- title: Bacillus kochii sp. nov., isolated from foods and a pharmaceuticals manufacturing site.
- authors: Seiler H, Schmidt V, Wenning M, Scherer S
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.027771-0
- year: 2011
- mesh: Aerobiosis, Bacillus/*classification/genetics/*isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, Chaperonin 60/genetics, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Diaminopimelic Acid/analysis, *Environmental Microbiology, *Food Microbiology, Hydrogen-Ion Concentration, Locomotion, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sodium Chloride/metabolism, Spores, Bacterial/cytology, Temperature
- topic2: Biotechnology
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 17728 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24673) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24673 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 70969 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID408260.1 | StrainInfo: A central database for resolving microbial strain identifiers |