Strain identifier
BacDive ID: 131893
Type strain: 
Species: Pseudomonas sp.
Strain Designation: T2-2
Strain history: <- X. Y. Chan, Microbiome Laboratory, University of Malaya; P. putida T2-2 <- C. S. Yang, Microbiome Laboratory, University of Malaya, Malaysia
NCBI tax ID(s): 306 (species)
General
@ref: 23685
BacDive-ID: 131893
DSM-Number: 102035
keywords: 16S sequence, Bacteria
description: Pseudomonas sp. T2-2 is a bacterium that was isolated from human tongue surface.
NCBI tax id
- NCBI tax id: 306
- Matching level: species
strain history
- @ref: 23685
- history: <- X. Y. Chan, Microbiome Laboratory, University of Malaya; P. putida T2-2 <- C. S. Yang, Microbiome Laboratory, University of Malaya, Malaysia
doi: 10.13145/bacdive131893.20240510.9
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Pseudomonadaceae
- genus: Pseudomonas
- species: Pseudomonas sp.
- full scientific name: Pseudomonas Migula 1894 (Approved Lists 1980)
synonyms
@ref synonym 20215 Serpens 20215 Flavimonas 20215 Stutzerimonas
@ref: 23685
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Pseudomonadales
family: Pseudomonadaceae
genus: Pseudomonas
species: Pseudomonas sp.
full scientific name: Pseudomonas sp.
strain designation: T2-2
type strain: no
Culture and growth conditions
culture medium
- @ref: 23685
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 23685
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
compound production
| @ref | compound |
|---|---|
| 23685 | N acyl homoserine lactones |
| 23685 | N octanoylhomoserine lactone |
| 23685 | N-3 dodecanoyl-L-homoserine lactone |
Isolation, sampling and environmental information
isolation
- @ref: 23685
- sample type: human tongue surface
- country: Malaysia
- origin.country: MYS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Mouth |
taxonmaps
- @ref: 69479
- File name: preview.99_239.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_61;97_89;98_203;99_239&stattab=map
- Last taxonomy: Pseudomonas
- 16S sequence: HQ907954
- Sequence Identity:
- Total samples: 2133
- soil counts: 368
- aquatic counts: 543
- animal counts: 799
- plant counts: 423
Sequence information
16S sequences
- @ref: 23685
- description: Pseudomonas putida strain T2-2 16S ribosomal RNA gene, partial sequence
- accession: HQ907954
- length: 1529
- database: nuccore
- NCBI tax ID: 303
External links
@ref: 23685
culture collection no.: DSM 102035
straininfo link
- @ref: 90280
- straininfo: 404421
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23685 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102035 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102035) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90280 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404421.1 |