Strain identifier

BacDive ID: 131882

Type strain: No

Species: Pseudomonas aeruginosa

Strain Designation: EGYII

Strain history: <- A. M. Embaby, Department of Biotechnology,Institute of Graduate Studies and Research, Alexandria, Egypt; EGYII

NCBI tax ID(s): 287 (species)

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General

@ref: 23674

BacDive-ID: 131882

DSM-Number: 101801

keywords: 16S sequence, Bacteria, mesophilic, human pathogen

description: Pseudomonas aeruginosa EGYII is a mesophilic human pathogen that was isolated from soil.

NCBI tax id

  • NCBI tax id: 287
  • Matching level: species

strain history

  • @ref: 23674
  • history: <- A. M. Embaby, Department of Biotechnology,Institute of Graduate Studies and Research, Alexandria, Egypt; EGYII

doi: 10.13145/bacdive131882.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Pseudomonas
  • species: Pseudomonas aeruginosa
  • full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Bacterium aeruginosum

@ref: 23674

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas aeruginosa

full scientific name: Pseudomonas aeruginosa (Schroeter 1872) Migula 1900

strain designation: EGYII

type strain: no

Culture and growth conditions

culture medium

  • @ref: 23674
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 23674
  • growth: positive
  • type: growth
  • temperature: 37
  • range: mesophilic

Physiology and metabolism

compound production

@refcompound
23674siderophore
23674L asparaginase

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea+hydrolysis
6836929016arginine+hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease+3.5.1.5
68369arginine dihydrolase+3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
23674---++-+-+--++-+++++-+

Isolation, sampling and environmental information

isolation

  • @ref: 23674
  • sample type: soil
  • geographic location: Alexandria city
  • country: Egypt
  • origin.country: EGY
  • continent: Africa

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

Safety information

risk assessment

  • @ref: 23674
  • pathogenicity human: yes
  • pathogenicity animal: yes
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 23674
  • description: Pseudomonas aeruginosa strain EGYII 16S ribosomal RNA gene, partial sequence
  • accession: KJ513299
  • length: 753
  • database: ena
  • NCBI tax ID: 287

External links

@ref: 23674

culture collection no.: DSM 101801

straininfo link

  • @ref: 90270
  • straininfo: 405166

literature

  • Pubmed-ID: 27015845
  • title: Unusual non-fluorescent broad spectrum siderophore activity (SID EGYII) by Pseudomonas aeruginosa strain EGYII DSM 101801 and a new insight towards simple siderophore bioassay.
  • authors: Embaby AM, Heshmat Y, Hussein A
  • journal: AMB Express
  • DOI: 10.1186/s13568-016-0192-1
  • year: 2016

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23674Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-101801Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101801)
68369Automatically annotated from API 20NE
90270Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID405166.1