Strain identifier

BacDive ID: 131880

Type strain: No

Species: Proteus vulgaris

Strain Designation: 65490/2016

Strain history: <- O. Zimmermann, Institut für Medizinische Mikrobiologie, Universität Göttingen, 65490/2016

NCBI tax ID(s): 585 (species)

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General

@ref: 23672

BacDive-ID: 131880

DSM-Number: 103498

keywords: genome sequence, Bacteria, Gram-negative, antibiotic resistance

description: Proteus vulgaris 65490/2016 is a Gram-negative bacterium that has multiple antibiotic resistances and was isolated from urine.

NCBI tax id

  • NCBI tax id: 585
  • Matching level: species

strain history

  • @ref: 23672
  • history: <- O. Zimmermann, Institut für Medizinische Mikrobiologie, Universität Göttingen, 65490/2016

doi: 10.13145/bacdive131880.20240916.9.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Proteus
  • species: Proteus vulgaris
  • full scientific name: Proteus vulgaris Hauser 1885 (Approved Lists 1980)

@ref: 23672

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Morganellaceae

genus: Proteus

species: Proteus vulgaris

full scientific name: Proteus vulgaris Hauser 1885 emend. Judicial Commission 1999

strain designation: 65490/2016

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.985

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
23672COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
23672NUTRIENT AGAR (DSMZ Medium 1)yeshttps://mediadive.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

  • @ref: 23672
  • growth: positive
  • type: growth
  • temperature: 37

Physiology and metabolism

antibiogram

  • @ref: 23672
  • medium: Mueller-Hinton Agar
  • incubation temperature: 37
  • incubation time: 1
  • Penicillin G: 20
  • oxacillin: 0
  • ampicillin: 24
  • ticarcillin: 34
  • mezlocillin: 32
  • cefalotin: 26
  • cefazolin: 22
  • cefotaxime: 40
  • aztreonam: 40-42
  • imipenem: 28
  • tetracycline: 18
  • chloramphenicol: 32
  • gentamycin: 20
  • amikacin: 22
  • vancomycin: 0
  • erythromycin: 0
  • lincomycin: 0
  • ofloxacin: 36
  • norfloxacin: 38
  • colistin: 0
  • pipemidic acid: 26
  • nitrofurantoin: 10
  • bacitracin: 0
  • polymyxin b: 0
  • kanamycin: 24
  • neomycin: 16-18
  • doxycycline: 20
  • ceftriaxone: 38-40
  • clindamycin: 0
  • fosfomycin: 30-32
  • moxifloxacin: 26
  • linezolid: 6
  • nystatin: 0
  • quinupristin/dalfopristin: 0
  • teicoplanin: 0
  • piperacillin/tazobactam: 34

spore formation

  • @ref: 69481
  • spore formation: no
  • confidence: 100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836817632nitrate+reduction
6836830849L-arabinose-fermentation
6836827613amygdalin+fermentation
6836828053melibiose-fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose-fermentation
6836830911sorbitol-fermentation
6836817268myo-inositol-fermentation
6836816899D-mannitol-fermentation
6836817634D-glucose+fermentation
683685291gelatin+hydrolysis
6836827897tryptophan+energy source
6836816199urea+hydrolysis
6836816947citrate+assimilation
6836818257ornithine-degradation
6836825094lysine-degradation
6836829016arginine-hydrolysis

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteyes
6836815688acetoinyes
6836835581indoleyes
6836816136hydrogen sulfideyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole+

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368gelatinase+
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
23672----++++++++----+-+--+-

Isolation, sampling and environmental information

isolation

  • @ref: 23672
  • sample type: urine
  • geographic location: Göttingen
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Fluids
  • Cat3: #Urine

Safety information

risk assessment

  • @ref: 23672
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

  • @ref: 66792
  • description: Proteus vulgaris strain FDAARGOS_1448
  • accession: 585.129
  • assembly level: wgs
  • database: patric
  • NCBI tax ID: 585

Genome-based predictions

predictions

@reftraitmodeldescriptionpredictionconfidencetraining_data
69481spore-formingspore-formingAbility to form endo- or exosporesno100no
69480gram-positivegram-positivePositive reaction to Gram-stainingno99.985no
69480anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no91.764no
69480spore-formingspore-formingAbility to form endo- or exosporesno89.231no
69480aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no77.174no
69480thermophilicthermophileAbility to grow at temperatures above or equal to 45°Cno98.447no
69480flagellatedmotile2+Ability to perform flagellated movementyes75.306no

External links

@ref: 23672

culture collection no.: DSM 103498

straininfo link

  • @ref: 90268
  • straininfo: 397967

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23672Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-103498Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103498)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
68368Automatically annotated from API 20E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. MünchPredictions based on the model GenomeNet Sporulation v. 110.21203/rs.3.rs-2527258/v1
90268Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID397967.1