Archive BacDiveID:10.13145/bacdive131870.20230509.8.1

Strain identifier

BacDive ID: 131870

Type strain:

Species: Pedobacter sp.

Strain Designation: Leaf250

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf250 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 1411316 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23662

BacDive-ID: 131870

DSM-Number: 102677

keywords: genome sequence, Bacteria, mesophilic

description: Pedobacter sp. Leaf250 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

NCBI tax id: 1411316
Matching level: species

strain history

@ref: 23662
history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf250 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131870.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacteroidota
domain: Bacteria
phylum: Bacteroidota
class: Sphingobacteriia
order: Sphingobacteriales
family: Sphingobacteriaceae
genus: Pedobacter
species: Pedobacter sp.
full scientific name: Pedobacter Steyn et al. 1998

@ref: 23662

domain: Bacteria

phylum: Bacteroidetes

class: Sphingobacteriia

order: Sphingobacteriales

family: Sphingobacteriaceae

genus: Pedobacter

species: Pedobacter sp.

full scientific name: Pedobacter sp.

strain designation: Leaf250

type strain: no

Culture and growth conditions

culture medium

@ref: 23662
name: R2A MEDIUM (DSMZ Medium 830)
growth: yes
link: https://mediadive.dsmz.de/medium/830
composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@ref: 23662
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23662
sample type: leaf of Arabidopsis thaliana, wild-type genotype
host species: Arabidopsis thaliana
geographic location: Brugg (47.4816806N 8.217547222E)
country: Switzerland
origin.country: CHE
continent: Europe
latitude: 47.4817
longitude: 8.2176

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Leaf (Phyllosphere)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Pedobacter sp. Leaf250 Leaf250	GCA_920984735	contig	ncbi	2876559
66792	Pedobacter sp. Leaf250	2876559.3	wgs	patric	2876559

Genome-based predictions

predictions

trait	prediction	confidence	training_data
gram-positive	no	96.343	no
anaerobic	no	99.55	no
halophile	no	96.977	no
spore-forming	no	94.271	no
glucose-util	yes	87.804	no
motile	no	90.263	no
flagellated	no	97.604	no
aerobic	yes	92.764	no
thermophile	no	99.04	yes
glucose-ferment	no	89.905	no

External links

@ref: 23662

culture collection no.: DSM 102677

straininfo link

@ref: 90258
straininfo: 397063

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23662	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102677	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102677)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90258	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID397063.1