Strain identifier
BacDive ID: 131858
Type strain: 
Species: Paenibacillus sp.
Strain Designation: Leaf72
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf72 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 58172 (species)
General
@ref: 23650
BacDive-ID: 131858
DSM-Number: 102671
keywords: genome sequence, Bacteria, mesophilic
description: Paenibacillus sp. Leaf72 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 23650
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf72 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive131858.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 23650
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
strain designation: Leaf72
type strain: no
Culture and growth conditions
culture medium
- @ref: 23650
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 23650
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23650
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Brugg (47.4816806N 8.217547222E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.4817
- longitude: 8.2176
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus sp. Leaf72 | GCA_001422685 | contig | ncbi | 1736234 |
| 66792 | Paenibacillus sp. Leaf72 | 1736234.3 | wgs | patric | 1736234 |
| 66792 | Paenibacillus sp. Leaf72 | 2643221785 | draft | img | 1736234 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 87.351 | no |
| gram-positive | yes | 85.076 | no |
| anaerobic | no | 99.193 | no |
| aerobic | yes | 91.063 | no |
| halophile | no | 93.027 | no |
| spore-forming | yes | 94.709 | no |
| thermophile | no | 99.717 | yes |
| glucose-util | yes | 92.164 | no |
| flagellated | yes | 77.655 | no |
| glucose-ferment | no | 85.74 | no |
External links
@ref: 23650
culture collection no.: DSM 102671
straininfo link
- @ref: 90246
- straininfo: 400415
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23650 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102671 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102671) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90246 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400415.1 |