Strain identifier
BacDive ID: 131857
Type strain: 
Species: Paenibacillus sp.
Strain Designation: Root52
Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root52 <- Y. Bai
NCBI tax ID(s): 58172 (species)
General
@ref: 23649
BacDive-ID: 131857
DSM-Number: 102487
keywords: genome sequence, Bacteria, mesophilic
description: Paenibacillus sp. Root52 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .
NCBI tax id
- NCBI tax id: 58172
- Matching level: species
strain history
- @ref: 23649
- history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root52 <- Y. Bai
doi: 10.13145/bacdive131857.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Paenibacillus
- species: Paenibacillus sp.
- full scientific name: Paenibacillus Ash et al. 1994
synonyms
- @ref: 20215
- synonym: Aerobacillus
@ref: 23649
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Paenibacillus
species: Paenibacillus sp.
full scientific name: Paenibacillus sp.
strain designation: Root52
type strain: no
Culture and growth conditions
culture medium
- @ref: 23649
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 23649
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23649
- sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
- host species: Arabidopsis thaliana
- geographic location: Cologne (50.958N 6.856E)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 50.958
- longitude: 6.856
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Paenibacillus sp. Root52 | GCA_001426865 | scaffold | ncbi | 1736552 |
| 66792 | Paenibacillus sp. Root52 | 1736552.3 | wgs | patric | 1736552 |
| 66792 | Paenibacillus sp. Root52 | 2643221543 | draft | img | 1736552 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | yes | 68.981 | no |
| gram-positive | yes | 85.365 | no |
| anaerobic | no | 98.187 | no |
| aerobic | yes | 85.078 | no |
| halophile | no | 79.12 | no |
| spore-forming | yes | 95.958 | no |
| thermophile | no | 99.39 | yes |
| glucose-util | yes | 93.019 | no |
| motile | yes | 88.875 | no |
| glucose-ferment | no | 83.483 | no |
External links
@ref: 23649
culture collection no.: DSM 102487
straininfo link
- @ref: 90245
- straininfo: 403990
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23649 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102487 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102487) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90245 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403990.1 |