Strain identifier
BacDive ID: 131843
Type strain: 
Species: Nocardioides sp.
Strain Designation: Leaf374
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf374 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 35761 (species)
General
@ref: 23636
BacDive-ID: 131843
DSM-Number: 102669
keywords: genome sequence, Bacteria, mesophilic
description: Nocardioides sp. Leaf374 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 35761
- Matching level: species
strain history
- @ref: 23636
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf374 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive131843.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Propionibacteriales
- family: Nocardioidaceae
- genus: Nocardioides
- species: Nocardioides sp.
- full scientific name: Nocardioides Prauser 1976 (Approved Lists 1980)
synonyms
@ref synonym 20215 Marmoricola 20215 Pimelobacter
@ref: 23636
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Nocardioidaceae
genus: Nocardioides
species: Nocardioides sp.
full scientific name: Nocardioides sp.
strain designation: Leaf374
type strain: no
Culture and growth conditions
culture medium
- @ref: 23636
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 23636
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23636
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Brugg (47.4816806N 8.217547222E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.4817
- longitude: 8.2176
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Nocardioides sp. Leaf374 Leaf374 | GCA_916862475 | contig | ncbi | 2876560 |
| 66792 | Nocardioides sp. Leaf374 | 2876560.4 | wgs | patric | 2876560 |
| 66792 | Nocardioides sp. Leaf374 | 2876560.3 | wgs | patric | 2876560 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| gram-positive | yes | 93.768 | no |
| anaerobic | no | 97.975 | no |
| halophile | no | 92.207 | no |
| spore-forming | no | 75.593 | no |
| glucose-util | yes | 88.827 | no |
| motile | no | 76.521 | no |
| flagellated | no | 91.456 | no |
| aerobic | yes | 93.497 | no |
| thermophile | no | 98.4 | no |
| glucose-ferment | no | 90.491 | no |
External links
@ref: 23636
culture collection no.: DSM 102669
straininfo link
- @ref: 90234
- straininfo: 407242
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23636 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102669 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102669) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90234 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407242.1 |