Strain identifier
BacDive ID: 131816
Type strain: 
Species: Micrococcus luteus
Strain Designation: 1D
Strain history: <- J. Sowada, Bundesinstitut für Risikobewertung; 1D
NCBI tax ID(s): 1270 (species)
General
@ref: 23611
BacDive-ID: 131816
DSM-Number: 101787
keywords: 16S sequence, Bacteria, mesophilic
description: Micrococcus luteus 1D is a mesophilic bacterium that was isolated from human volar forearm collected as enrichment culture of skin swabs.
NCBI tax id
- NCBI tax id: 1270
- Matching level: species
strain history
- @ref: 23611
- history: <- J. Sowada, Bundesinstitut für Risikobewertung; 1D
doi: 10.13145/bacdive131816.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Micrococcaceae
- genus: Micrococcus
- species: Micrococcus luteus
- full scientific name: Micrococcus luteus (Schroeter 1872) Cohn 1872 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Bacteridium luteum
@ref: 23611
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Pseudomonadales
family: Micrococcaceae
genus: Micrococcus
species: Micrococcus luteus
full scientific name: Micrococcus luteus (Schroeter 1872) Cohn 1872 emend. Nouioui et al. 2018
strain designation: 1D
type strain: no
Culture and growth conditions
culture medium
- @ref: 23611
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 23611
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23611
- sample type: human volar forearm collected as enrichment culture of skin swabs
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Laboratory | #Lab enrichment |
| #Infection | #Patient | #Swab |
| #Host | #Human | |
| #Host Body-Site | #Organ | #Skin, Nail, Hair |
taxonmaps
- @ref: 69479
- File name: preview.99_746.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_453;97_519;98_597;99_746&stattab=map
- Last taxonomy: Micrococcus
- 16S sequence: KF993664
- Sequence Identity:
- Total samples: 56744
- soil counts: 6060
- aquatic counts: 9695
- animal counts: 37863
- plant counts: 3126
Safety information
risk assessment
- @ref: 23611
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23611
- description: Micrococcus luteus strain 1D 16S ribosomal RNA gene, partial sequence
- accession: KF993664
- length: 1446
- database: ena
- NCBI tax ID: 1270
External links
@ref: 23611
culture collection no.: DSM 101787
straininfo link
- @ref: 90207
- straininfo: 400087
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23611 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101787 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101787) | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90207 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400087.1 |