Strain identifier
BacDive ID: 131810
Type strain: 
Species: Microbacterium sp.
Strain Designation: Leaf161
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf161 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 51671 (species)
version 9.1 (current version)
General
@ref: 23605
BacDive-ID: 131810
DSM-Number: 102666
keywords: genome sequence, Bacteria, Gram-positive
description: Microbacterium sp. Leaf161 is a Gram-positive bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 51671
- Matching level: species
strain history
- @ref: 23605
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf161 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive131810.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium sp.
- full scientific name: Microbacterium Orla-Jensen 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Aureobacterium
@ref: 23605
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium sp.
full scientific name: Microbacterium sp.
strain designation: Leaf161
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 90.192
Culture and growth conditions
culture medium
- @ref: 23605
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 23605
- growth: positive
- type: growth
- temperature: 28
Isolation, sampling and environmental information
isolation
- @ref: 23605
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Hoengg (47.4090306N 8.470169444E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.409
- longitude: 8.4702
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Microbacterium sp. Leaf161 | GCA_001423645 | contig | ncbi | 1736281 |
| 66792 | Microbacterium sp. Leaf161 | 1736281.3 | wgs | patric | 1736281 |
| 66792 | Microbacterium sp. Leaf161 | 2690315795 | draft | img | 1736281 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 90.192 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 97.286 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 68.286 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 85.978 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 96.967 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 77 | no |
External links
@ref: 23605
culture collection no.: DSM 102666
straininfo link
- @ref: 90201
- straininfo: 403892
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23605 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102666 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102666) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90201 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403892.1 |