Strain identifier
BacDive ID: 131796
Type strain: 
Species: Microbacterium sp.
Strain Designation: Root280D1
Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root280D1 <- Y. Bai
NCBI tax ID(s): 51671 (species)
General
@ref: 23591
BacDive-ID: 131796
DSM-Number: 102461
keywords: genome sequence, Bacteria, mesophilic
description: Microbacterium sp. Root280D1 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .
NCBI tax id
- NCBI tax id: 51671
- Matching level: species
strain history
- @ref: 23591
- history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root280D1 <- Y. Bai
doi: 10.13145/bacdive131796.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Microbacterium
- species: Microbacterium sp.
- full scientific name: Microbacterium Orla-Jensen 1919 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Aureobacterium
@ref: 23591
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Microbacterium
species: Microbacterium sp.
full scientific name: Microbacterium sp.
strain designation: Root280D1
type strain: no
Culture and growth conditions
culture medium
- @ref: 23591
- name: PP-MEDIUM (DSMZ Medium 513)
- growth: yes
- link: https://mediadive.dsmz.de/medium/513
- composition: Name: PP-MEDIUM (DSMZ Medium 513) Composition: Agar 15.0 g/l Polypeptone 10.0 g/l Yeast extract 2.0 g/l MgSO4 x 7 H2O 1.0 g/l Distilled water
culture temp
- @ref: 23591
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23591
- sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
- host species: Arabidopsis thaliana
- geographic location: Potsdam, Golm district (52.416N 12.968E)
- country: Germany
- origin.country: DEU
- continent: Europe
- latitude: 52.416
- longitude: 12.968
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Microbacterium sp. Root280D1 | GCA_001428975 | scaffold | ncbi | 1736510 |
| 66792 | Microbacterium sp. Root280D1 | 1736510.3 | wgs | patric | 1736510 |
| 66792 | Microbacterium sp. Root280D1 | 2643221724 | draft | img | 1736510 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| flagellated | no | 92.019 | no |
| gram-positive | yes | 92.771 | no |
| anaerobic | no | 99.595 | no |
| aerobic | yes | 95.339 | no |
| halophile | no | 90.566 | no |
| spore-forming | no | 87.174 | no |
| glucose-util | yes | 83.253 | no |
| motile | yes | 60.058 | no |
| thermophile | no | 99.74 | yes |
| glucose-ferment | no | 90.467 | no |
External links
@ref: 23591
culture collection no.: DSM 102461
straininfo link
- @ref: 90187
- straininfo: 406545
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23591 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102461 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102461) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90187 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID406545.1 |