Strain identifier
BacDive ID: 131787
Type strain: 
Species: Methylobacterium sp.
Strain Designation: Leaf112
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf112 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 409 (species)
General
@ref: 23582
BacDive-ID: 131787
DSM-Number: 102651
keywords: genome sequence, Bacteria, mesophilic
description: Methylobacterium sp. Leaf112 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 409
- Matching level: species
strain history
- @ref: 23582
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf112 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive131787.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Hyphomicrobiales
- family: Methylobacteriaceae
- genus: Methylobacterium
- species: Methylobacterium sp.
- full scientific name: Methylobacterium Patt et al. 1976 (Approved Lists 1980)
@ref: 23582
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Methylobacteriaceae
genus: Methylobacterium
species: Methylobacterium sp.
full scientific name: Methylobacterium sp.
strain designation: Leaf112
type strain: no
Culture and growth conditions
culture medium
- @ref: 23582
- name: MINIMAL MEDIA CONTAINING METHANOL (DSMZ Medium 1629)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1629
- composition: Name: MINIMAL MEDIA CONTAINING METHANOL (DSMZ Medium 1629) Composition: Agar 15.0 g/l Methanol 3.96 g/l K2HPO4 2.4 g/l NH4Cl 1.62 g/l NaH2PO4 x 2 H2O 1.1 g/l MgSO4 x 7 H2O 0.2 g/l Na2-EDTA 0.015 g/l ZnSO4 x 7 H2O 0.0045 g/l CaCl2 x 6 H2O 0.003 g/l FeSO4 x 6 H2O 0.003 g/l CoCl2 x 6 H2O 0.003 g/l H3BO3 0.001 g/l MnCl2 x 4 H2O 0.00064 g/l Na2MoO4 x 2 H2O 0.0004 g/l CuSO4 x 2 H2O 0.0003 g/l Distilled water
culture temp
- @ref: 23582
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23582
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Brugg (47.4816806N 8.217547222E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.4817
- longitude: 8.2176
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Methylobacterium sp. Leaf112 | GCA_001423295 | contig | ncbi | 1736258 |
| 66792 | Methylobacterium sp. Leaf112 | 1736258.3 | wgs | patric | 1736258 |
| 66792 | Methylobacterium sp. Leaf112 | 2643221802 | draft | img | 1736258 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 87.655 | no |
| gram-positive | no | 97.853 | no |
| anaerobic | no | 97.16 | no |
| aerobic | yes | 89.912 | no |
| halophile | no | 91.376 | no |
| spore-forming | no | 93.624 | no |
| thermophile | no | 99.29 | yes |
| glucose-util | yes | 85.226 | no |
| flagellated | no | 74.164 | no |
| glucose-ferment | no | 89.175 | no |
External links
@ref: 23582
culture collection no.: DSM 102651
straininfo link
- @ref: 90179
- straininfo: 400551
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23582 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102651 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102651) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90179 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID400551.1 |