Archive BacDiveID:10.13145/bacdive131747.20230509.8.1

Strain identifier

BacDive ID: 131747

Type strain:

Species: Lysobacter sp.

Strain Designation: Root604

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root604 <- Y. Bai

NCBI tax ID(s): 72226 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23543

BacDive-ID: 131747

DSM-Number: 102438

keywords: genome sequence, Bacteria, mesophilic

description: Lysobacter sp. Root604 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

NCBI tax id: 72226
Matching level: species

strain history

@ref: 23543
history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root604 <- Y. Bai

doi: 10.13145/bacdive131747.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Lysobacterales
family: Lysobacteraceae
genus: Lysobacter
species: Lysobacter sp.
full scientific name: Lysobacter Christensen and Cook 1978 (Approved Lists 1980)

@ref: 23543

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Lysobacteraceae

genus: Lysobacter

species: Lysobacter sp.

full scientific name: Lysobacter sp.

strain designation: Root604

type strain: no

Culture and growth conditions

culture medium

@ref: 23543
name: NUTRIENT AGAR (DSMZ Medium 1)
growth: yes
link: https://mediadive.dsmz.de/medium/1
composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@ref: 23543
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23543
sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
host species: Arabidopsis thaliana
geographic location: Cologne (50.958N 6.856E)
country: Germany
origin.country: DEU
continent: Europe
latitude: 50.958
longitude: 6.856

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Lysobacter sp. Root604	1736568.3	wgs	patric	1736568
66792	Lysobacter sp. Root604	2643221573	draft	img	1736568
66792	Lysobacter sp. Root604	GCA_001427505	scaffold	ncbi	1736568

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	97.363	no
gram-positive	no	98.579	no
anaerobic	no	99.278	no
aerobic	yes	93.514	no
halophile	no	94.879	no
spore-forming	no	95.238	no
thermophile	no	99.398	yes
glucose-util	yes	89.988	no
motile	no	85.196	no
glucose-ferment	no	90.765	no

External links

@ref: 23543

culture collection no.: DSM 102438

straininfo link

@ref: 90139
straininfo: 404862

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23543	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102438	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102438)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90139	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID404862.1