Archive BacDiveID:10.13145/bacdive131743.20230509.8.1

Strain identifier

BacDive ID: 131743

Type strain:

Species: Lysobacter sp.

Strain Designation: Root96

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root96 <- Y. Bai

NCBI tax ID(s): 72226 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23539

BacDive-ID: 131743

DSM-Number: 102443

keywords: genome sequence, Bacteria, mesophilic

description: Lysobacter sp. Root96 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

NCBI tax id: 72226
Matching level: species

strain history

@ref: 23539
history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root96 <- Y. Bai

doi: 10.13145/bacdive131743.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Gammaproteobacteria
order: Lysobacterales
family: Lysobacteraceae
genus: Lysobacter
species: Lysobacter sp.
full scientific name: Lysobacter Christensen and Cook 1978 (Approved Lists 1980)

@ref: 23539

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Lysobacteraceae

genus: Lysobacter

species: Lysobacter sp.

full scientific name: Lysobacter sp.

strain designation: Root96

type strain: no

Culture and growth conditions

culture medium

@ref: 23539
name: R2A MEDIUM (DSMZ Medium 830)
growth: yes
link: https://mediadive.dsmz.de/medium/830
composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@ref: 23539
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23539
sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
host species: Arabidopsis thaliana
geographic location: Cologne (50.958N 6.856E)
country: Germany
origin.country: DEU
continent: Europe
latitude: 50.958
longitude: 6.856

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Lysobacter sp. Root96	1736612.3	wgs	patric	1736612
66792	Lysobacter sp. Root96	2643221727	draft	img	1736612
66792	Lysobacter sp. Root96	GCA_001429315	scaffold	ncbi	1736612

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	97.546	no
gram-positive	no	98.254	no
anaerobic	no	99.261	no
aerobic	yes	92.262	no
halophile	no	96.023	no
spore-forming	no	95.616	no
glucose-util	yes	89.558	no
motile	no	86.496	no
thermophile	no	99.277	yes
glucose-ferment	no	92.455	no

External links

@ref: 23539

culture collection no.: DSM 102443

straininfo link

@ref: 90135
straininfo: 406901

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23539	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102443	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102443)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90135	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID406901.1