Strain identifier
BacDive ID: 131735
Type strain: 
Species: Leifsonia sp.
Strain Designation: Root227
Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root227 <- Y. Bai
NCBI tax ID(s): 1870902 (species)
General
@ref: 23531
BacDive-ID: 131735
DSM-Number: 102434
keywords: genome sequence, Bacteria, mesophilic
description: Leifsonia sp. Root227 is a mesophilic bacterium that was isolated from roots of wild-type Arabidopsis thaliana plants.
NCBI tax id
- NCBI tax id: 1870902
- Matching level: species
strain history
- @ref: 23531
- history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root227 <- Y. Bai
doi: 10.13145/bacdive131735.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Microbacteriaceae
- genus: Leifsonia
- species: Leifsonia sp.
- full scientific name: Leifsonia Evtushenko et al. 2000
synonyms
- @ref: 20215
- synonym: Leifsonia
@ref: 23531
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Microbacteriaceae
genus: Leifsonia
species: Leifsonia sp.
full scientific name: Leifsonia sp.
strain designation: Root227
type strain: no
Culture and growth conditions
culture medium
- @ref: 23531
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 23531
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23531
- sample type: roots of wild-type Arabidopsis thaliana plants
- host species: Arabidopsis thaliana
- geographic location: Saint-Évarzec (47.941N 04.012W)
- country: France
- origin.country: FRA
- continent: Europe
- latitude: 47.941
- longitude: -4.012
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Root (Rhizome) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Leifsonia sp. Root227 | GCA_001428745 | contig | ncbi | 1736496 |
| 66792 | Leifsonia sp. Root227 | 1736496.3 | wgs | patric | 1736496 |
| 66792 | Leifsonia sp. Root227 | 2643221616 | draft | img | 1736496 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 58.026 | no |
| gram-positive | yes | 87.449 | no |
| anaerobic | no | 99.27 | no |
| aerobic | yes | 92.51 | no |
| halophile | no | 94.473 | no |
| spore-forming | no | 87.58 | no |
| thermophile | no | 98.808 | no |
| glucose-util | yes | 88.009 | no |
| flagellated | no | 94.329 | no |
| glucose-ferment | no | 86.003 | no |
External links
@ref: 23531
culture collection no.: DSM 102434
straininfo link
- @ref: 90126
- straininfo: 401465
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23531 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102434 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102434) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90126 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID401465.1 |