Strain identifier

BacDive ID: 13173

Type strain: Yes

Species: Halopseudomonas xinjiangensis

Strain Designation: S3-3

Strain history: CIP <- 2010, CCTCC <- M. Liu, Wuhan Univ., Wuhan, China: strain S3-3

NCBI tax ID(s): 487184 (species)

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General

@ref: 16827

BacDive-ID: 13173

DSM-Number: 23391

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Halopseudomonas xinjiangensis S3-3 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from desert sand.

NCBI tax id

  • NCBI tax id: 487184
  • Matching level: species

strain history

@refhistory
16827<- NRRL (USDA ARS Culture and Patent Culture Collection) <- M. Liu, College of Life Sciences, University of Wuhan
123986CIP <- 2010, CCTCC <- M. Liu, Wuhan Univ., Wuhan, China: strain S3-3

doi: 10.13145/bacdive13173.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Halopseudomonas
  • species: Halopseudomonas xinjiangensis
  • full scientific name: Halopseudomonas xinjiangensis (Liu et al. 2009) Rudra and Gupta 2021

  • synonyms

    @refsynonym
    20215Neopseudomonas xinjiangensis
    20215Pseudomonas xinjiangensis

@ref: 16827

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas xinjiangensis

full scientific name: Pseudomonas xinjiangensis Liu et al. 2009

strain designation: S3-3

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
28912negative1.35 µm0.65 µmrod-shapedyes
123986negativerod-shapedyes

pigmentation

  • @ref: 28912
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16827BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)yeshttps://mediadive.dsmz.de/medium/514Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
40317MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
123986CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
16827positivegrowth37mesophilic
28912positivegrowth04-42
28912positiveoptimum37mesophilic
40317positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
28912positivegrowth06-09alkaliphile
28912positiveoptimum8

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
28912aerobe
123986obligate aerobe

spore formation

  • @ref: 28912
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
28912NaClpositivegrowth<6 %
28912NaClpositiveoptimum2 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2891217128adipate+carbon source
2891251850methyl pyruvate+carbon source
2891253423tween 40+carbon source
2891253426tween 80+carbon source
2891217632nitrate+reduction
6836925115malate-assimilation
6836917128adipate+assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction
12398617632nitrate+reduction
12398616301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
12398635581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
28912acid phosphatase+3.1.3.2
28912alkaline phosphatase+3.1.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
123986oxidase+
123986catalase+1.11.1.6
123986urease-3.5.1.5
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin+3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase+3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
123986-+++-+--+--++-------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
16827----------------+-+-+

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
16827desert sandXinjiang provinceChinaCHNAsia
123986Environment, Sand sampleXinjiang desertChinaCHNAsia2008

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Desert
#Environmental#Terrestrial#Sandy
#Condition#Xerophilic

taxonmaps

  • @ref: 69479
  • File name: preview.99_18472.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_1057;97_11036;98_13572;99_18472&stattab=map
  • Last taxonomy: Pseudomonas xinjiangensis subclade
  • 16S sequence: EU286805
  • Sequence Identity:
  • Total samples: 1052
  • soil counts: 193
  • aquatic counts: 669
  • animal counts: 157
  • plant counts: 33

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
168271Risk group (German classification)
1239861Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16827
  • description: Pseudomonas xinjiangensis strain S3-3 16S ribosomal RNA gene, partial sequence
  • accession: EU286805
  • length: 1408
  • database: ena
  • NCBI tax ID: 487184

GC content

  • @ref: 16827
  • GC-content: 60.9

External links

@ref: 16827

culture collection no.: DSM 23391, CCTCC AB 207151, NRRL B-51270, CIP 110124

straininfo link

  • @ref: 82381
  • straininfo: 362847

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
16827Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23391)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23391
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
28912Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2535128776041
40317Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7948
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82381Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID362847.1StrainInfo: A central database for resolving microbial strain identifiers
123986Curators of the CIPCollection of Institut Pasteur (CIP 110124)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110124