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Strain identifier

BacDive ID: 131727

Type strain: No

Species: Geodermatophilus sp.

Strain Designation: Leaf369

Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf369 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

NCBI tax ID(s): 52020 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 23523

BacDive-ID: 131727

DSM-Number: 102615

keywords: genome sequence, Bacteria, mesophilic

description: Geodermatophilus sp. Leaf369 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.

NCBI tax id

  • NCBI tax id: 52020
  • Matching level: species

strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf369 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann

doi: 10.13145/bacdive131727.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Geodermatophilales
  • family: Geodermatophilaceae
  • genus: Geodermatophilus
  • species: Geodermatophilus sp.
  • full scientific name: Geodermatophilus Luedemann 1968 (Approved Lists 1980)
  • synonyms

    • @ref: 20215
    • synonym: Pleomorpha

@ref: 23523

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Geodermatophilaceae

genus: Geodermatophilus

species: Geodermatophilus sp.

full scientific name: Geodermatophilus sp.

strain designation: Leaf369

type strain: no

Morphology

multimedia

  • @ref: 23523
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102615.jpg
  • caption: Medium 65 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 23523
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

  • @ref: 23523
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 23523
  • sample type: leaf of Arabidopsis thaliana, wild-type genotype
  • host species: Arabidopsis thaliana
  • geographic location: Brugg (47.4816806N 8.217547222E)
  • country: Switzerland
  • origin.country: CHE
  • continent: Europe
  • latitude: 47.4817
  • longitude: 8.2176

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Leaf (Phyllosphere)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Geodermatophilus sp. Leaf369 Leaf369GCA_001424455contigncbi1736354
66792Geodermatophilus sp. Leaf3691736354.4wgspatric1736354
66792Geodermatophilus sp. Leaf3692643221930draftimg1736354
66792Comamonadaceae bacterium RH-23may17-1291GCA_947474785contigpatric1871071

External links

@ref: 23523

culture collection no.: DSM 102615

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
23523Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-102615Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102615)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes