Strain identifier
BacDive ID: 131727
Type strain: 
Species: Geodermatophilus sp.
Strain Designation: Leaf369
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf369 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 52020 (species)
General
@ref: 23523
BacDive-ID: 131727
DSM-Number: 102615
keywords: genome sequence, Bacteria, mesophilic
description: Geodermatophilus sp. Leaf369 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 52020
- Matching level: species
strain history
- @ref: 23523
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf369 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive131727.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Geodermatophilales
- family: Geodermatophilaceae
- genus: Geodermatophilus
- species: Geodermatophilus sp.
- full scientific name: Geodermatophilus Luedemann 1968 (Approved Lists 1980)
synonyms
@ref synonym 20215 Pleomorpha 20215 Petropleomorpha
@ref: 23523
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Geodermatophilaceae
genus: Geodermatophilus
species: Geodermatophilus sp.
full scientific name: Geodermatophilus sp.
strain designation: Leaf369
type strain: no
Morphology
multimedia
- @ref: 23523
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_102615.jpg
- caption: Medium 65 28°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 23523
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
- @ref: 23523
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23523
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Brugg (47.4816806N 8.217547222E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.4817
- longitude: 8.2176
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Geodermatophilus sp. Leaf369 | GCA_001424455 | contig | ncbi | 1736354 |
| 66792 | Geodermatophilus sp. Leaf369 | 1736354.4 | wgs | patric | 1736354 |
| 66792 | Geodermatophilus sp. Leaf369 | 2643221930 | draft | img | 1736354 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 75.43 | no |
| gram-positive | yes | 92.112 | no |
| anaerobic | no | 98.07 | no |
| aerobic | yes | 87.702 | no |
| halophile | no | 91.186 | no |
| spore-forming | no | 77.007 | no |
| glucose-util | yes | 86.022 | no |
| thermophile | no | 99.11 | no |
| flagellated | no | 92.821 | no |
| glucose-ferment | no | 89.74 | no |
External links
@ref: 23523
culture collection no.: DSM 102615
straininfo link
- @ref: 90118
- straininfo: 403603
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23523 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102615 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102615) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90118 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403603.1 |