Archive BacDiveID:10.13145/bacdive131718.20230509.8.1

Strain identifier

BacDive ID: 131718

Type strain:

Species: Flavobacterium sp.

Strain Designation: Root186

Strain history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root186 <- Y. Bai

NCBI tax ID(s): 239 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 23514

BacDive-ID: 131718

DSM-Number: 102423

keywords: genome sequence, Bacteria, mesophilic

description: Flavobacterium sp. Root186 is a mesophilic bacterium that was isolated from roots of Arabidopsis thaliana ecotype Shakdara .

NCBI tax id

NCBI tax id: 239
Matching level: species

strain history

@ref: 23514
history: <- P. Schulze-Lefert, Max Planck Institute for Plant Breeding Research, Cologne, Germany; Root186 <- Y. Bai

doi: 10.13145/bacdive131718.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/bacteroidota
domain: Bacteria
phylum: Bacteroidota
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium sp.
full scientific name: Flavobacterium Bergey et al. 1923 (Approved Lists 1980)

@ref: 23514

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium sp.

full scientific name: Flavobacterium sp.

strain designation: Root186

type strain: no

Culture and growth conditions

culture medium

@ref: 23514
name: TRYPTONE YEAST EXTRACT GLUCOSE MEDIUM (TYG) (DSMZ Medium 1618)
growth: yes
link: https://mediadive.dsmz.de/medium/1618
composition: Name: TRYPTONE YEAST EXTRACT GLUCOSE MEDIUM (TYG) (DSMZ Medium 1618) Composition: Agar 20.0 g/l KCl 6.34 g/l Na2SO4 2.4 g/l NaCl 1.2 g/l Tryptone 1.0 g/l Yeast extract 1.0 g/l NaHCO3 0.5 g/l D-Glucose 0.5 g/l MgSO4 x 7 H2O 0.25 g/l CaCl2 x 2 H2O 0.22 g/l K2SO4 0.17 g/l K2HPO4 0.13 g/l Na2CO3 0.09 g/l Fe(III)-EDTA 0.07 g/l Distilled water

culture temp

@ref: 23514
growth: positive
type: growth
temperature: 28
range: mesophilic

Isolation, sampling and environmental information

isolation

@ref: 23514
sample type: roots of Arabidopsis thaliana ecotype Shakdara (Sha)
host species: Arabidopsis thaliana
geographic location: Cologne (50.958N 6.856E)
country: Germany
origin.country: DEU
continent: Europe
latitude: 50.958
longitude: 6.856

isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)
#Host Body-Site	#Plant	#Root (Rhizome)

Sequence information

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Flavobacterium sp. Root186	GCA_001428525	scaffold	ncbi	1736485
66792	Flavobacterium sp. Root186	1736485.3	wgs	patric	1736485
66792	Flavobacterium sp. Root186	2643221600	draft	img	1736485

Genome-based predictions

predictions

trait	prediction	confidence	training_data
flagellated	no	94.185	no
gram-positive	no	98.359	no
anaerobic	no	99.678	no
aerobic	yes	90.958	no
halophile	no	95.994	no
spore-forming	no	93.037	no
glucose-util	yes	91.165	no
motile	no	84.176	no
thermophile	no	99.667	yes
glucose-ferment	no	88.426	no

External links

@ref: 23514

culture collection no.: DSM 102423

straininfo link

@ref: 90109
straininfo: 400927

Reference

@id	authors	title	doi/url	catalogue
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ	10.1099/ijsem.0.004332
23514	Curators of the DSMZ		https://www.dsmz.de/collection/catalogue/details/culture/DSM-102423	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102423)
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)	https://diaspora-project.de/progress.html#genomes
90109	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.	StrainInfo: A central database for resolving microbial strain identifiers	10.60712/SI-ID400927.1