Strain identifier
BacDive ID: 131711
Type strain: 
Species: Enterobacter sp.
Strain Designation: T1-1
Strain history: <- X. Y. Chan, Microbiome Laboratory, University of Malaya; T1-1 <- C. S. Yang, Microbiome Laboratory, University of Malaya
NCBI tax ID(s): 42895 (species)
version 9.1 (current version)
General
@ref: 23507
BacDive-ID: 131711
DSM-Number: 102032
keywords: genome sequence, 16S sequence, Bacteria, Gram-negative
description: Enterobacter sp. T1-1 is a Gram-negative bacterium that was isolated from human tongue surface.
NCBI tax id
- NCBI tax id: 42895
- Matching level: species
strain history
- @ref: 23507
- history: <- X. Y. Chan, Microbiome Laboratory, University of Malaya; T1-1 <- C. S. Yang, Microbiome Laboratory, University of Malaya
doi: 10.13145/bacdive131711.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Enterobacterales
- family: Enterobacteriaceae
- genus: Enterobacter
- species: Enterobacter sp.
- full scientific name: Enterobacter Hormaeche and Edwards 1960 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Cloaca
@ref: 23507
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Enterobacteriales, not validated
family: Enterobacteriaceae
genus: Enterobacter
species: Enterobacter sp.
full scientific name: Enterobacter sp.
strain designation: T1-1
type strain: no
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.5
Culture and growth conditions
culture medium
- @ref: 23507
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 23507
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
compound production
- @ref: 23507
- compound: N acyl homoserine lactones
Isolation, sampling and environmental information
isolation
- @ref: 23507
- sample type: human tongue surface
- country: Malaysia
- origin.country: MYS
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | |
| #Host Body-Site | #Oral cavity and airways | #Mouth |
Sequence information
16S sequences
- @ref: 23507
- description: Enterobacter cloacae strain T1-1 16S ribosomal RNA gene, partial sequence
- accession: HQ907953
- length: 647
- database: nuccore
- NCBI tax ID: 550
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Enterobacter sp. T1-1 | GCA_000710795 | contig | ncbi | 1449966 |
| 66792 | Enterobacter sp. T1-1 | 1449966.3 | wgs | patric | 1449966 |
| 66792 | Enterobacter sp. T1-1 | 2585428027 | draft | img | 1449966 |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 99.5 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 94.837 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 88.637 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 65.515 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 100 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 78.863 | no |
External links
@ref: 23507
culture collection no.: DSM 102032
straininfo link
- @ref: 90102
- straininfo: 404706
literature
- topic: Pathogenicity
- Pubmed-ID: 23202161
- title: Long chain N-acyl homoserine lactone production by Enterobacter sp. isolated from human tongue surfaces.
- authors: Yin WF, Purmal K, Chin S, Chan XY, Chan KG
- journal: Sensors (Basel)
- DOI: 10.3390/s121114307
- year: 2012
- mesh: 4-Butyrolactone/*analogs & derivatives/biosynthesis, Enterobacter/*metabolism, Humans, Mass Spectrometry, Tongue/*microbiology
- topic2: Biotechnology
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23507 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102032 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102032) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90102 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID404706.1 |