Strain identifier
BacDive ID: 131709
Type strain: 
Species: Dyella japonica
Strain Designation: A8
Strain history: <- J.-W. Chen, Microbiome Laboratory, University of Malaya; A8
NCBI tax ID(s): 231455 (species)
version 8.1 (current version)
General
@ref: 23505
BacDive-ID: 131709
DSM-Number: 101096
keywords: genome sequence, 16S sequence, Bacteria, mesophilic
description: Dyella japonica A8 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 231455
- Matching level: species
strain history
- @ref: 23505
- history: <- J.-W. Chen, Microbiome Laboratory, University of Malaya; A8
doi: 10.13145/bacdive131709.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Lysobacterales
- family: Rhodanobacteraceae
- genus: Dyella
- species: Dyella japonica
- full scientific name: Dyella japonica Xie and Yokota 2005
@ref: 23505
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Xanthomonadales
family: Rhodanobacteraceae
genus: Dyella
species: Dyella japonica
full scientific name: Dyella japonica Xie and Yokota 2005
strain designation: A8
type strain: no
Culture and growth conditions
culture medium
- @ref: 23505
- name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
- growth: yes
- link: https://mediadive.dsmz.de/medium/535
- composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
culture temp
- @ref: 23505
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23505
- sample type: soil
- geographic location: Rimba Ilmu
- country: Malaysia
- origin.country: MYS
- continent: Asia
- latitude: 3.1333
- longitude: 101.65
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
taxonmaps
- @ref: 69479
- File name: preview.99_5367.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_114;96_316;97_3161;98_3972;99_5367&stattab=map
- Last taxonomy: Dyella
- 16S sequence: JX081589
- Sequence Identity:
- Total samples: 1439
- soil counts: 980
- aquatic counts: 133
- animal counts: 188
- plant counts: 138
Safety information
risk assessment
- @ref: 23505
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 23505
- description: Dyella japonica strain A8 16S ribosomal RNA gene, partial sequence
- accession: JX081589
- length: 1500
- database: ena
- NCBI tax ID: 1217721
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Dyella japonica A8 | GCA_000725385 | complete | ncbi | 1217721 |
| 66792 | Dyella japonica A8 | GCA_000292265 | contig | ncbi | 1217721 |
| 66792 | Dyella japonica A8 | 1217721.7 | complete | patric | 1217721 |
| 66792 | Dyella japonica A8 | 1217721.3 | wgs | patric | 1217721 |
| 66792 | Dyella japonica A8 | 2588253754 | complete | img | 1217721 |
| 66792 | Dyella japonica A8 | 2551306479 | draft | img | 1217721 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 85.461 | no |
| flagellated | no | 78.812 | no |
| gram-positive | no | 98.309 | no |
| anaerobic | no | 99.008 | no |
| aerobic | yes | 92.268 | no |
| halophile | no | 96.138 | no |
| spore-forming | no | 96.079 | no |
| glucose-util | yes | 93.133 | no |
| thermophile | no | 98.49 | no |
| glucose-ferment | no | 89.252 | no |
External links
@ref: 23505
culture collection no.: DSM 101096
straininfo link
- @ref: 90101
- straininfo: 407094
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23505 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101096 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101096) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 90101 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID407094.1 |