Strain identifier
BacDive ID: 131672
Type strain: 
Species: Chryseobacterium sp.
Strain Designation: Leaf180
Strain history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf180 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
NCBI tax ID(s): 1871047 (species)
General
@ref: 23468
BacDive-ID: 131672
DSM-Number: 102587
keywords: genome sequence, Bacteria, mesophilic
description: Chryseobacterium sp. Leaf180 is a mesophilic bacterium that was isolated from leaf of Arabidopsis thaliana, wild-type genotype.
NCBI tax id
- NCBI tax id: 1871047
- Matching level: species
strain history
- @ref: 23468
- history: <- J. A. Vorholt, Institute of Microbiology, ETH Zurich, Switzerland; Leaf180 <- D. B. Müller, E. Potthoff and M. Remus-Emsermann
doi: 10.13145/bacdive131672.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Chryseobacterium
- species: Chryseobacterium sp.
- full scientific name: Chryseobacterium Vandamme et al. 1994
synonyms
@ref synonym 20215 Halpernia 20215 Sejongia 20215 Soonwooa 20215 Kaistella 20215 Planobacterium 20215 Epilithonimonas
@ref: 23468
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Weeksellaceae
genus: Chryseobacterium
species: Chryseobacterium sp.
full scientific name: Chryseobacterium sp.
strain designation: Leaf180
type strain: no
Culture and growth conditions
culture medium
- @ref: 23468
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
- @ref: 23468
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23468
- sample type: leaf of Arabidopsis thaliana, wild-type genotype
- host species: Arabidopsis thaliana
- geographic location: Brugg (47.4816806N 8.217547222E)
- country: Switzerland
- origin.country: CHE
- continent: Europe
- latitude: 47.4817
- longitude: 8.2176
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Chryseobacterium sp. Leaf180 | GCA_001424585 | contig | ncbi | 1736289 |
| 66792 | Chryseobacterium sp. Leaf180 | 1736289.3 | wgs | patric | 1736289 |
| 66792 | Chryseobacterium sp. Leaf180 | 2643221920 | draft | img | 1736289 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | no | 90.763 | no |
| gram-positive | no | 98.622 | no |
| anaerobic | no | 99.528 | no |
| aerobic | yes | 86.189 | no |
| halophile | no | 93.25 | no |
| spore-forming | no | 96.011 | no |
| thermophile | no | 99.609 | yes |
| glucose-util | yes | 85.267 | no |
| flagellated | no | 96.608 | no |
| glucose-ferment | no | 93.571 | no |
External links
@ref: 23468
culture collection no.: DSM 102587
straininfo link
- @ref: 90068
- straininfo: 402204
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23468 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-102587 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 102587) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90068 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID402204.1 |