Strain identifier
BacDive ID: 131666
Type strain: 
Species: Burkholderia sp.
Strain Designation: A9
Strain history: <- J.-W. Chen, Univ. of Malaya, Kuala Lumpur, Malaysia; A9
NCBI tax ID(s): 36773 (species)
version 8.1 (current version)
General
@ref: 23462
BacDive-ID: 131666
DSM-Number: 101989
keywords: genome sequence, Bacteria, mesophilic
description: Burkholderia sp. A9 is a mesophilic bacterium that was isolated from soil.
NCBI tax id
- NCBI tax id: 36773
- Matching level: species
strain history
- @ref: 23462
- history: <- J.-W. Chen, Univ. of Malaya, Kuala Lumpur, Malaysia; A9
doi: 10.13145/bacdive131666.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Burkholderia
- species: Burkholderia sp.
- full scientific name: Burkholderia Yabuuchi et al. 1993
@ref: 23462
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Burkholderia
species: Burkholderia sp.
full scientific name: Burkholderia sp.
strain designation: A9
type strain: no
Culture and growth conditions
culture medium
- @ref: 23462
- name: NUTRIENT AGAR (DSMZ Medium 1)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1
- composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 23462
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 27689 | decanoate | + | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | + | assimilation |
| 68369 | 16899 | D-mannitol | + | assimilation |
| 68369 | 16024 | D-mannose | + | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23462 | + | - | - | - | - | - | - | + | + | + | + | + | + | - | + | + | +/- | + | + | + | + |
Isolation, sampling and environmental information
isolation
- @ref: 23462
- sample type: soil
- geographic location: Rimba Ilmu
- country: Malaysia
- origin.country: MYS
- continent: Asia
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Soil
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Burkholderia sp. A9 | GCA_000801975 | contig | ncbi | 1365108 |
| 66792 | Burkholderia sp. A9 | 1365108.3 | wgs | patric | 1365108 |
| 66792 | Burkholderia sp. A9 | 2639762967 | draft | img | 1365108 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 86.425 | no |
| gram-positive | no | 94.642 | no |
| anaerobic | no | 96.556 | no |
| halophile | no | 88.46 | no |
| spore-forming | no | 96.319 | no |
| glucose-util | yes | 88.752 | yes |
| thermophile | no | 98.018 | yes |
| flagellated | no | 85.854 | no |
| aerobic | yes | 86.17 | no |
| glucose-ferment | no | 91.977 | yes |
External links
@ref: 23462
culture collection no.: DSM 101989
straininfo link
- @ref: 90062
- straininfo: 403478
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23462 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-101989 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 101989) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 68369 | Automatically annotated from API 20NE | |||
| 90062 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID403478.1 |