Strain identifier

BacDive ID: 13166

Type strain: Yes

Species: Halopseudomonas xiamenensis

Strain Designation: C10-2

Strain history: <- JCM/RIKEN <- Q. Lai; C10-2

NCBI tax ID(s): 157792 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 16283

BacDive-ID: 13166

DSM-Number: 22326

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Halopseudomonas xiamenensis C10-2 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from Activated sludge sample collected at Qianpu sewage treatment plant.

NCBI tax id

  • NCBI tax id: 157792
  • Matching level: species

strain history

  • @ref: 16283
  • history: <- JCM/RIKEN <- Q. Lai; C10-2

doi: 10.13145/bacdive13166.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Pseudomonadaceae
  • genus: Halopseudomonas
  • species: Halopseudomonas xiamenensis
  • full scientific name: Halopseudomonas xiamenensis (Lai and Shao 2008) Rudra and Gupta 2021

  • synonyms

    • @ref: 20215
    • synonym: Pseudomonas xiamenensis

@ref: 16283

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Pseudomonadales

family: Pseudomonadaceae

genus: Pseudomonas

species: Pseudomonas xiamenensis

full scientific name: Pseudomonas xiamenensis Lai and Shao 2008

strain designation: C10-2

type strain: yes

Morphology

cell morphology

  • @ref: 32415
  • gram stain: negative
  • cell length: 1.1-1.3 µm
  • cell width: 0.6-0.8 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 32415
  • production: no

multimedia

  • @ref: 16283
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_22326.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 16283
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/535
  • composition: Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
16283positivegrowth28mesophilic
32415positivegrowth10-45
32415positiveoptimum25-30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 32415
  • oxygen tolerance: aerobe

spore formation

  • @ref: 32415
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
32415NaClpositivegrowth0-8 %
32415NaClpositiveoptimum01-03 %

observation

  • @ref: 32415
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3241530089acetate+carbon source
3241516449alanine+carbon source
3241522599arabinose+carbon source
3241516947citrate+carbon source
3241528087glycogen+carbon source
3241524996lactate+carbon source
3241526271proline+carbon source
3241517272propionate+carbon source
3241517822serine+carbon source
3241530031succinate+carbon source
3241553423tween 40+carbon source
3241553426tween 80+carbon source
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
32415catalase+1.11.1.6
32415cytochrome oxidase+1.9.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
16283---------------+-++-+

Isolation, sampling and environmental information

isolation

  • @ref: 16283
  • sample type: Activated sludge sample collected at Qianpu sewage treatment plant
  • geographic location: Fujian, Xiamen
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Activated sludge
#Engineered#Waste#Water treatment plant

taxonmaps

  • @ref: 69479
  • File name: preview.99_77208.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_23;96_1057;97_1235;98_42652;99_77208&stattab=map
  • Last taxonomy: Pseudomonas xiamenensis subclade
  • 16S sequence: DQ088664
  • Sequence Identity:
  • Total samples: 1036
  • soil counts: 167
  • aquatic counts: 250
  • animal counts: 554
  • plant counts: 65

Safety information

risk assessment

  • @ref: 16283
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 16283
  • description: Pseudomonas sp. C10-2 16S ribosomal RNA gene, partial sequence
  • accession: DQ088664
  • length: 1498
  • database: ena
  • NCBI tax ID: 1123022

Genome sequences

  • @ref: 66792
  • description: Pseudomonas xiamenensis DSM 22326
  • accession: 2576861402
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1123022

GC content

@refGC-contentmethod
1628361.2high performance liquid chromatography (HPLC)
3241561.2

External links

@ref: 16283

culture collection no.: DSM 22326, CGMCC 1.6446, JCM 13530, MCCC 1A00089

straininfo link

  • @ref: 82374
  • straininfo: 358829

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16283Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22326)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22326
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32415Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2863828776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
82374Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID358829.1StrainInfo: A central database for resolving microbial strain identifiers