Strain identifier
BacDive ID: 131633
Type strain: 
Species: Bacillus pumilus
Strain Designation: C8_12
Strain history: <- European Space Agency, Noordwijk, Netherlands, <- C. Moissl-Eichinger, Medical Univ. Graz, Austria; C8_12
NCBI tax ID(s): 1408 (species)
General
@ref: 23429
BacDive-ID: 131633
DSM-Number: 103869
keywords: genome sequence, Bacteria, mesophilic, human pathogen
description: Bacillus pumilus C8_12 is a mesophilic human pathogen that was isolated from cleanroom facility, TAS-I.
NCBI tax id
- NCBI tax id: 1408
- Matching level: species
strain history
- @ref: 23429
- history: <- European Space Agency, Noordwijk, Netherlands, <- C. Moissl-Eichinger, Medical Univ. Graz, Austria; C8_12
doi: 10.13145/bacdive131633.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus pumilus
- full scientific name: Bacillus pumilus Meyer and Gottheil 1901 (Approved Lists 1980)
@ref: 23429
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus pumilus
full scientific name: Bacillus pumilus Meyer and Gottheil 1901
strain designation: C8_12
type strain: no
Culture and growth conditions
culture medium
- @ref: 23429
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 23429
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Isolation, sampling and environmental information
isolation
- @ref: 23429
- sample type: cleanroom facility, TAS-I
- geographic location: Torino
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Built environment
- Cat3: #Clean room
Safety information
risk assessment
- @ref: 23429
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Bacillus altitudinis DSM 103869
- accession: GCA_029537175
- assembly level: complete
- database: ncbi
- NCBI tax ID: 293387
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 87.23 | no |
| flagellated | yes | 84.21 | no |
| gram-positive | yes | 90.422 | no |
| anaerobic | no | 99.337 | no |
| aerobic | yes | 88.005 | no |
| halophile | yes | 67.266 | no |
| spore-forming | yes | 95.044 | no |
| glucose-ferment | no | 87.405 | no |
| thermophile | no | 96.839 | yes |
| glucose-util | yes | 90.008 | no |
External links
@ref: 23429
culture collection no.: DSM 103869
straininfo link
- @ref: 90039
- straininfo: 405670
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23429 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103869 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103869) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90039 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405670.1 |