Strain identifier
BacDive ID: 131633
Type strain: 
Species: Bacillus pumilus
Strain Designation: C8_12
Strain history: <- European Space Agency, Noordwijk, Netherlands, <- C. Moissl-Eichinger, Medical Univ. Graz, Austria; C8_12
NCBI tax ID(s): 1408 (species)
version 9.1 (current version)
General
@ref: 23429
BacDive-ID: 131633
DSM-Number: 103869
keywords: genome sequence, Bacteria, spore-forming, Gram-positive, human pathogen
description: Bacillus pumilus C8_12 is a spore-forming, Gram-positive human pathogen that was isolated from cleanroom facility, TAS-I.
NCBI tax id
- NCBI tax id: 1408
- Matching level: species
strain history
- @ref: 23429
- history: <- European Space Agency, Noordwijk, Netherlands, <- C. Moissl-Eichinger, Medical Univ. Graz, Austria; C8_12
doi: 10.13145/bacdive131633.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Bacillaceae
- genus: Bacillus
- species: Bacillus pumilus
- full scientific name: Bacillus pumilus Meyer and Gottheil 1901 (Approved Lists 1980)
@ref: 23429
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Bacillaceae
genus: Bacillus
species: Bacillus pumilus
full scientific name: Bacillus pumilus Meyer and Gottheil 1901
strain designation: C8_12
type strain: no
Culture and growth conditions
culture medium
- @ref: 23429
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
- @ref: 23429
- growth: positive
- type: growth
- temperature: 28
Physiology and metabolism
spore formation
- @ref: 69480
- spore formation: yes
- confidence: 92.457
Isolation, sampling and environmental information
isolation
- @ref: 23429
- sample type: cleanroom facility, TAS-I
- geographic location: Torino
- country: Italy
- origin.country: ITA
- continent: Europe
isolation source categories
- Cat1: #Engineered
- Cat2: #Built environment
- Cat3: #Clean room
Safety information
risk assessment
- @ref: 23429
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
- @ref: 66792
- description: Bacillus altitudinis DSM 103869
- accession: GCA_029537175
- assembly level: complete
- database: ncbi
- NCBI tax ID: 293387
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | yes | 80.743 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 87.259 | no |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 69.371 | no |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | yes | 92.457 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 92.783 | no |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | yes | 78.392 | no |
External links
@ref: 23429
culture collection no.: DSM 103869
straininfo link
- @ref: 90039
- straininfo: 405670
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 23429 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-103869 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 103869) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 90039 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID405670.1 |