Strain identifier
BacDive ID: 131554
Type strain: 
Species: Clostridium punense
Strain Designation: BLPYG-8
Strain history: <- D. R. Ranade, Agharkar Research Inst., Microbial Scs. Div., Pune, India; BLPYG-8 <- V. B. Lanjekar and D. R. Ranade {2008}
NCBI tax ID(s): 1054297 (species)
version 8.1 (current version)
General
@ref: 22781
BacDive-ID: 131554
DSM-Number: 28650
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, mesophilic, Gram-positive
description: Clostridium punense BLPYG-8 is an anaerobe, spore-forming, mesophilic bacterium that was isolated from faeces of healthy 56-year-old human male volunteer.
NCBI tax id
- NCBI tax id: 1054297
- Matching level: species
strain history
- @ref: 22781
- history: <- D. R. Ranade, Agharkar Research Inst., Microbial Scs. Div., Pune, India; BLPYG-8 <- V. B. Lanjekar and D. R. Ranade {2008}
doi: 10.13145/bacdive131554.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Clostridiaceae
- genus: Clostridium
- species: Clostridium punense
- full scientific name: Clostridium punense Lanjekar et al. 2015
@ref: 22781
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Clostridiaceae
genus: Clostridium
species: Clostridium punense
full scientific name: Clostridium punense Lanjekar et al. 2015
strain designation: BLPYG-8
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: positive
- confidence: 100
colony morphology
- @ref: 63097
- incubation period: 1 day
Culture and growth conditions
culture temp
- @ref: 63097
- growth: positive
- type: growth
- temperature: 37
- range: mesophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 22781 | anaerobe | |
| 63097 | anaerobe | |
| 69480 | anaerobe | 100 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 99.999 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|
| 22781 | faeces of healthy 56-year-old human male volunteer | Pune | India | IND | Asia | |
| 63097 | Human faeces,healthy 56-year old male | Maharashtra,Pune | India | IND | Asia | 2008-11-14 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Human | #Male |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
taxonmaps
- @ref: 69479
- File name: preview.99_41526.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_34;96_614;97_2668;98_3308;99_41526&stattab=map
- Last taxonomy: Clostridium punense
- 16S sequence: JN093128
- Sequence Identity:
- Total samples: 359
- soil counts: 155
- aquatic counts: 94
- animal counts: 99
- plant counts: 11
Sequence information
16S sequences
- @ref: 22781
- description: Clostridium punense 16S ribosomal RNA gene, partial sequence
- accession: JN093128
- length: 1497
- database: ena
- NCBI tax ID: 1054297
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Clostridium punense DSM 28650 | GCA_017874425 | contig | ncbi | 1054297 |
| 66792 | Clostridium punense strain DSM 28650 | 1054297.3 | wgs | patric | 1054297 |
| 66792 | Clostridium punense DSM 28650 | 2913512619 | draft | img | 1054297 |
GC content
- @ref: 22781
- GC-content: 44
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 84.534 | no |
| flagellated | yes | 52.377 | no |
| gram-positive | yes | 81.657 | no |
| anaerobic | yes | 98.657 | yes |
| aerobic | no | 97.624 | no |
| halophile | no | 93.634 | no |
| spore-forming | yes | 94.195 | no |
| thermophile | no | 98.757 | no |
| glucose-util | yes | 83.832 | no |
| glucose-ferment | yes | 57.074 | no |
External links
@ref: 22781
culture collection no.: DSM 28650, CCUG 64195, MCC 2737, MCM B-514
straininfo link
- @ref: 89968
- straininfo: 412253
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 26419229 | Clostridium punense sp. nov., an obligate anaerobe isolated from healthy human faeces. | Lanjekar VB, Marathe NP, Shouche YS, Ranade DR | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000644 | 2015 | Bacterial Typing Techniques, Base Composition, Clostridium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Feces/*microbiology, Fermentation, Humans, India, Male, Middle Aged, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Pathogenicity |
| Phylogeny | 31199222 | Clostridium prolinivorans sp. nov., a thermophilic bacterium isolated from an anaerobic reactor degrading propionate. | Huang Y, Wei Z, Cong L, Qiu Z, Chen R, Deng Y, Zhang Y, Fan H, Ma S | Int J Syst Evol Microbiol | 10.1099/ijsem.0.003523 | 2019 | Anaerobiosis, Bacterial Typing Techniques, Base Composition, Bioreactors/*microbiology, Clostridium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Phospholipids/chemistry, *Phylogeny, Propionates/metabolism, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2/chemistry | Transcriptome |
Reference
| @id | authors | title | doi/url | catalogue |
|---|---|---|---|---|
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | 10.1099/ijsem.0.004332 | |
| 22781 | Curators of the DSMZ | https://www.dsmz.de/collection/catalogue/details/culture/DSM-28650 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 28650) | |
| 63097 | Curators of the CCUG | https://www.ccug.se/strain?id=64195 | Culture Collection University of Gothenburg (CCUG) (CCUG 64195) | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | MicrobeAtlas 1.0 beta | https://microbeatlas.org/ | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | https://diaspora-project.de/progress.html#genomes | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | Predictions based on the model GenomeNet Sporulation v. 1 | 10.21203/rs.3.rs-2527258/v1 | |
| 89968 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | StrainInfo: A central database for resolving microbial strain identifiers | 10.60712/SI-ID412253.1 |