Strain identifier

BacDive ID: 131546

Type strain: Yes

Species: Tamaricihabitans halophyticus

Culture col. no.: DSM 45765, NBRC 109361, KLBMP 1356

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 22773

BacDive-ID: 131546

DSM-Number: 45765

keywords: 16S sequence, genome sequence, Bacteria, mesophilic

description: Tamaricihabitans halophyticus DSM 45765 is a mesophilic bacterium that was isolated from surface sterilized root of the halophyte Tamarix chinensis Lour, healthy plant tissue.

strain history: <- S. Qin, Jiangasu Normal University, China; KLBMP 1356

doi: 10.13145/bacdive131546.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinobacteria
  • domain: Bacteria
  • phylum: Actinobacteria
  • class: Actinobacteria
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Tamaricihabitans
  • species: Tamaricihabitans halophyticus
  • full scientific name: Tamaricihabitans halophyticus Qin et al. 2015

@ref: 22773

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Tamaricihabitans

species: Tamaricihabitans halophyticus

full scientific name: Tamaricihabitans halophyticus Qin et al. 2015

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 22773
  • name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf

culture temp

  • @ref: 22773
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 22773
  • sample type: surface sterilized root of the halophyte Tamarix chinensis Lour, healthy plant tissue
  • host species: Tamarix chinensis
  • geographic location: Jiangsu province, coastal area
  • country: China
  • origin.country: CHN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Tree
#Host Body-Site#Plant#Root (Rhizome)
#Host Body-Site#Plant#Sterilized plant part

Safety information

risk assessment

  • @ref: 22773
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22773
  • description: Tamaricihabitans halophyticus 16S ribosomal RNA gene, partial sequence
  • accession: JX982738
  • length: 1445
  • database: ena
  • NCBI tax ID: 1262583

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Tamaricihabitans halophyticus DSM 45765GCA_004340875contigncbi1262583
66792Tamaricihabitans halophyticus strain DSM 457651262583.3wgspatric1262583
66792Tamaricihabitans halophyticus DSM 457652795385477permanentimg1262583

GC content

  • @ref: 22773
  • GC-content: 67.2
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22773

culture collection no.: DSM 45765, NBRC 109361, KLBMP 1356

Reference

@idauthorstitledoi/urlcatalogue
20215D.Gleim, M.Kracht, N.Weiss et. al.Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes sincehttp://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.html
22773Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-45765Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45765)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes