Strain identifier

BacDive ID: 131545

Type strain: Yes

Species: Actinokineospora guangxiensis

Strain Designation: GK-6

Strain history: CGMCC 4.7154 <-- H. Wu and B. Liu; Guangxi Univ., China; Gk-6.

NCBI tax ID(s): 1490288 (species)

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General

@ref: 22772

BacDive-ID: 131545

DSM-Number: 46779

keywords: 16S sequence, Bacteria

description: Actinokineospora guangxiensis GK-6 is a bacterium that was isolated from soil.

NCBI tax id

  • NCBI tax id: 1490288
  • Matching level: species

strain history

@refhistory
22772<- H. Wu, Guangxi University,China; GK-6
67770CGMCC 4.7154 <-- H. Wu and B. Liu; Guangxi Univ., China; Gk-6.

doi: 10.13145/bacdive131545.20240510.9

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Pseudonocardiales
  • family: Pseudonocardiaceae
  • genus: Actinokineospora
  • species: Actinokineospora guangxiensis
  • full scientific name: Actinokineospora guangxiensis Wu and Liu 2015

@ref: 22772

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Pseudonocardiaceae

genus: Actinokineospora

species: Actinokineospora guangxiensis

full scientific name: Actinokineospora guangxiensis Wu and Liu 2015

strain designation: GK-6

type strain: yes

Morphology

multimedia

  • @ref: 22772
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_46779.jpg
  • caption: Medium 215 28°C
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22772GPHF-MEDIUM (DSMZ Medium 553)yeshttps://mediadive.dsmz.de/medium/553Name: GPHF-MEDIUM (DSMZ Medium 553) Composition: Agar 20.0 g/l Glucose 10.0 g/l Beef extract 5.0 g/l Yeast extract 5.0 g/l Casein peptone 5.0 g/l CaCl2 x 2 H2O 0.74 g/l Distilled water
22772BHI MEDIUM (DSMZ Medium 215)yeshttps://mediadive.dsmz.de/medium/215Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

culture temp

@refgrowthtypetemperature
22772positivegrowth28
67770positivegrowth28

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
22772soilGuangxi province, Nanning (22° 51' 18.46'' N 108° 18' 19.41'' E)ChinaCHNAsia22.8551108.305
67770SoilNanning, Guangxi Zhuang Autonomous Region, south-western ChinaChinaCHNAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_38451.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_10;96_394;97_640;98_11399;99_38451&stattab=map
  • Last taxonomy: Actinokineospora
  • 16S sequence: KJ027603
  • Sequence Identity:
  • Total samples: 117
  • soil counts: 63
  • aquatic counts: 16
  • animal counts: 13
  • plant counts: 25

Safety information

risk assessment

  • @ref: 22772
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22772
  • description: Actinokineospora guangxiensis strain Gk-6 16S ribosomal RNA gene, partial sequence
  • accession: KJ027603
  • length: 1421
  • database: nuccore
  • NCBI tax ID: 1490288

GC content

  • @ref: 22772
  • GC-content: 73.4
  • method: high performance liquid chromatography (HPLC)

External links

@ref: 22772

culture collection no.: DSM 46779, CGMCC 4.7154, JCM 31764

straininfo link

  • @ref: 89959
  • straininfo: 407318

literature

  • topic: Phylogeny
  • Pubmed-ID: 26410559
  • title: Actinokineospora guangxiensis sp. nov., isolated from soil.
  • authors: Wu H, Liu B
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijsem.0.000627
  • year: 2015
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Diaminopimelic Acid/chemistry, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/analogs & derivatives/chemistry
  • topic2: Genetics

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22772Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-46779Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 46779)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
89959Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID407318.1