Strain identifier

BacDive ID: 131528

Type strain: Yes

Species: Longibaculum muris

Strain Designation: MT10-315-CC-1.2-2

Strain history: <- Barbel Fosel, DSM, Germany

NCBI tax ID(s): 1796628 (species)

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General

@ref: 22755

BacDive-ID: 131528

DSM-Number: 29487

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, filament-shaped

description: Longibaculum muris MT10-315-CC-1.2-2 is an anaerobe, mesophilic, filament-shaped bacterium that was isolated from caecal content; TNFdeltaARE/+ C57BL/6 mouse.

NCBI tax id

  • NCBI tax id: 1796628
  • Matching level: species

strain history

@refhistory
22755<- T. Clavel, TU Munich, Freising-Weihenstephan, Germany; MT10-315-CC-1.2-2
67771<- Barbel Fosel, DSM, Germany

doi: 10.13145/bacdive131528.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Erysipelotrichia
  • order: Erysipelotrichales
  • family: Erysipelotrichaceae
  • genus: Longibaculum
  • species: Longibaculum muris
  • full scientific name: Longibaculum muris Lagkouvardos et al. 2017

@ref: 22755

domain: Bacteria

phylum: Firmicutes

class: Erysipelotrichia

order: Erysipelotrichales

family: Erysipelotrichaceae

genus: Longibaculum

species: Longibaculum muris

full scientific name: Longibaculum muris Lagkouvardos et al. 2017

strain designation: MT10-315-CC-1.2-2

type strain: yes

Morphology

cell morphology

@refcell shapegram stainconfidence
67771filament-shaped
67771positive
69480positive100

colony morphology

  • @ref: 22755
  • incubation period: 2-3 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
22755WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339)yeshttps://mediadive.dsmz.de/medium/339Name: WILKINS-CHALGREN ANAEROBE BROTH (DSMZ Medium 339) Composition: dehydrated Wilkins-Chalgren medium 33.0 g/l L-Cysteine HCl 0.3 g/l Sodium resazurin 0.0005 g/l Distilled water
22755COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

@refgrowthtypetemperaturerange
22755positivegrowth37mesophilic
67771positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
22755anaerobe
67771anaerobe
69480anaerobe100

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 98.805

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase+3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase-
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380alpha-glucosidase-3.2.1.20
68380beta-galactosidase-3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
22755----------------------+------
22755----+-+--+------------+------
22755----+-+--+------------+------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
22755caecal content; TNFdeltaARE/+ C57BL/6 mouseFreisingGermanyDEUEurope
67771From mouse instine, caecal content; TNFdeltaARE/+ C57BL/6 mouseFreisingGermanyDEUEurope

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Muridae (Mouse/Rat)
#Host Body-Site#Gastrointestinal tract#Large intestine
#Host Body Product#Gastrointestinal tract#Caecal content

taxonmaps

  • @ref: 69479
  • File name: preview.99_1254.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_209;96_727;97_850;98_990;99_1254&stattab=map
  • Last taxonomy: Longibaculum muris subclade
  • 16S sequence: KR364765
  • Sequence Identity:
  • Total samples: 19847
  • soil counts: 94
  • aquatic counts: 319
  • animal counts: 19370
  • plant counts: 64

Safety information

risk assessment

  • @ref: 22755
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 22755
  • description: Longibaculum muris strain MT10-315-CC-1.2-2 16S ribosomal RNA gene, partial sequence
  • accession: KR364765
  • length: 1465
  • database: ena
  • NCBI tax ID: 1796628

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Longibaculum muris DSM 29487GCA_004343035scaffoldncbi1796628
66792Longibaculum muris strain DSM 294871796628.13wgspatric1796628
66792Longibaculum muris DSM 294872788499828draftimg1796628
66792Longibaculum muris DSM 29487GCA_024622235contigncbi1796628

GC content

@refGC-contentmethod
2275530.8sequence analysis
6777130.8genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes88no
motileno90.264no
flagellatedno95.48no
gram-positiveyes97.003yes
anaerobicyes98.442yes
aerobicno98.631yes
halophileno72.819no
spore-formingno72.373no
glucose-utilyes86.69no
thermophileno96.218yes
glucose-fermentyes69.31no

External links

@ref: 22755

culture collection no.: DSM 29487, KCTC 15536

straininfo link

  • @ref: 89942
  • straininfo: 398469

Reference

@idauthorstitledoi/urlcatalogue
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ10.1099/ijsem.0.004332
22755Curators of the DSMZhttps://www.dsmz.de/collection/catalogue/details/culture/DSM-29487Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 29487)
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.MicrobeAtlas 1.0 betahttps://microbeatlas.org/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg OvermannPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)https://diaspora-project.de/progress.html#genomes
89942Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.StrainInfo: A central database for resolving microbial strain identifiers10.60712/SI-ID398469.1