General

@ref: 22736

BacDive-ID: 131509

DSM-Number: 29882

keywords: 16S sequence, Bacteria, mesophilic

description: Umboniibacter roseus 14-121-B13 is a mesophilic bacterium that was isolated from coastal surface seawater.

NCBI tax id

• NCBI tax id: 1652109
• Matching level: species

strain history

• @ref: 22736
• history: <- H.-R. Sung, KCTC

doi: 10.13145/bacdive131509.20230509.8.1

Name and taxonomic classification

LPSN

• @ref: 20215
• description: domain/bacteria
• keyword: phylum/pseudomonadota
• domain: Bacteria
• phylum: Pseudomonadota
• class: Gammaproteobacteria
• order: Cellvibrionales
• family: Cellvibrionaceae
• genus: Umboniibacter
• species: Umboniibacter roseus
• full scientific name: Umboniibacter roseus Sung et al. 2015

@ref: 22736

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Cellvibrionaceae, not assigned to order

family: Cellvibrionaceae

genus: Umboniibacter

species: Umboniibacter roseus

full scientific name: Umboniibacter roseus Sung et al. 2015

strain designation: 14-121-B13

type strain: yes

Culture and growth conditions

culture medium

• @ref: 22736
• name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c)
• growth: yes
• link: https://mediadive.dsmz.de/medium/514c
• composition: Name: REACTIVATION WITH LIQUID MEDIUM 514 (DSMZ Medium 514c) Composition: NaCl 19.45 g/l Agar 18.0 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l Na2CO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

• @ref: 22736
• growth: positive
• type: growth
• temperature: 28
• range: mesophilic

Isolation, sampling and environmental information

isolation

• @ref: 22736
• sample type: coastal surface seawater
• geographic location: near the seashore of the South Sea at Namhae-gun (34° 47' N 128° 2' E)
• country: Republic of Korea
• origin.country: KOR
• continent: Asia
• latitude: 34.7833
• longitude: 128.033

isolation source categories

taxonmaps

• @ref: 69479
• File name: preview.99_19111.png
• url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_235;96_9760;97_11761;98_14453;99_19111&stattab=map
• Last taxonomy: Umboniibacter
• 16S sequence: KP313719
• Sequence Identity:
• Total samples: 2908
• soil counts: 52
• aquatic counts: 2706
• animal counts: 128
• plant counts: 22

Safety information

risk assessment

• @ref: 22736
• biosafety level: 1
• biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

• @ref: 22736
• description: Umboniibacter roseus strain 14-121-B13 16S ribosomal RNA gene, partial sequence
• accession: KP313719
• length: 1471
• database: ena
• NCBI tax ID: 1652109

GC content

• @ref: 22736
• GC-content: 48.9
• method: high performance liquid chromatography (HPLC)

External links

@ref: 22736

culture collection no.: DSM 29882, KCTC 42467

straininfo link

• @ref: 89924
• straininfo: 403476

literature

• topic: Phylogeny
• Pubmed-ID: 26311687
• title: Umboniibacter roseus sp. nov., isolated from coastal seawater.
• authors: Sung HR, Kim M, Shin KS
• journal: Int J Syst Evol Microbiol
• DOI: 10.1099/ijsem.0.000564
• year: 2015
• mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Gammaproteobacteria/*classification/genetics/isolation & purification, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Ubiquinone/chemistry
• topic2: Transcriptome

Reference